Decision tree ensembles in biomedical time-series classifaction

Slides:

Advertisements

Similar presentations

ECG Signal processing (2)

Advertisements

Recognizing Human Actions by Attributes CVPR2011 Jingen Liu, Benjamin Kuipers, Silvio Savarese Dept. of Electrical Engineering and Computer Science University.

Random Forest Predrag Radenković 3237/10

Relevant characteristics extraction from semantically unstructured data PhD title : Data mining in unstructured data Daniel I. MORARIU, MSc PhD Supervisor:

Principal Component Analysis Based on L1-Norm Maximization Nojun Kwak IEEE Transactions on Pattern Analysis and Machine Intelligence, 2008.

Combining Classification and Model Trees for Handling Ordinal Problems D. Anyfantis, M. Karagiannopoulos S. B. Kotsiantis, P. E. Pintelas Educational Software.

An Introduction of Support Vector Machine

SVM—Support Vector Machines

Particle swarm optimization for parameter determination and feature selection of support vector machines Shih-Wei Lin, Kuo-Ching Ying, Shih-Chieh Chen,

Robust Multi-Kernel Classification of Uncertain and Imbalanced Data

UCI KDD Archive University of California at Irvine –

The value of kernel function represents the inner product of two training points in feature space Kernel functions merge two steps 1. map input data from.

Speaker Adaptation for Vowel Classification

1 Ensembles of Nearest Neighbor Forecasts Dragomir Yankov, Eamonn Keogh Dept. of Computer Science & Eng. University of California Riverside Dennis DeCoste.

Rotation Forest: A New Classifier Ensemble Method 交通大學電子所蕭晴駿 Juan J. Rodríguez and Ludmila I. Kuncheva.

Intelligible Models for Classification and Regression

CHURN PREDICTION MODEL IN RETAIL BANKING USING FUZZY C- MEANS CLUSTERING Džulijana Popović Consumer Finance, Zagrebačka banka d.d. Consumer Finance, Zagrebačka.

An Introduction to Support Vector Machines Martin Law.

A REVIEW OF FEATURE SELECTION METHODS WITH APPLICATIONS Alan Jović, Karla Brkić, Nikola Bogunović {alan.jovic, karla.brkic,

Identifying Computer Graphics Using HSV Model And Statistical Moments Of Characteristic Functions Xiao Cai, Yuewen Wang.

A Multivariate Biomarker for Parkinson’s Disease M. Coakley, G. Crocetti, P. Dressner, W. Kellum, T. Lamin The Michael L. Gargano 12 th Annual Research.

Slide Image Retrieval: A Preliminary Study Guo Min Liew and Min-Yen Kan National University of Singapore Web IR / NLP Group (WING)

Comparing the Parallel Automatic Composition of Inductive Applications with Stacking Methods Hidenao Abe & Takahira Yamaguchi Shizuoka University, JAPAN.

Semantic Similarity over Gene Ontology for Multi-label Protein Subcellular Localization Shibiao WAN and Man-Wai MAK The Hong Kong Polytechnic University.

Extraction of nonlinear features from biomedical time-series using HRVFrame framework Analysis of cardiac rhythm records using HRVFrame framework and Weka.

Support Vector Machines Mei-Chen Yeh 04/20/2010. The Classification Problem Label instances, usually represented by feature vectors, into one of the predefined.

Random Forest-Based Classification of Heart Rate Variability Signals by Using Combinations of Linear and Nonlinear Features Alan Jovic, Nikola Bogunovic.

Machine Learning Using Support Vector Machines (Paper Review) Presented to: Prof. Dr. Mohamed Batouche Prepared By: Asma B. Al-Saleh Amani A. Al-Ajlan.

Kernel Methods A B M Shawkat Ali 1 2 Data Mining ¤ DM or KDD (Knowledge Discovery in Databases) Extracting previously unknown, valid, and actionable.

Hierarchical Annotation of Medical Images Ivica Dimitrovski 1, Dragi Kocev 2, Suzana Loškovska 1, Sašo Džeroski 2 1 Department of Computer Science, Faculty.

An Introduction to Support Vector Machines (M. Law)

Combining multiple learners Usman Roshan. Bagging Randomly sample training data Determine classifier C i on sampled data Goto step 1 and repeat m times.

Protein Fold Recognition as a Data Mining Coursework Project Badri Adhikari Department of Computer Science University of Missouri-Columbia.

Study of Protein Prediction Related Problems Ph.D. candidate Le-Yi WEI 1.

META-LEARNING FOR AUTOMATIC SELECTION OF ALGORITHMS FOR TEXT CLASSIFICATION Karol Furdík, Ján Paralič, Gabriel Tutoky {Jan.Paralic,

Presentation Title Department of Computer Science A More Principled Approach to Machine Learning Michael R. Smith Brigham Young University Department of.

HRVFrame: Java-Based Framework for Feature Extraction from Cardiac Rhythm Alan Jovic and Nikola Bogunovic Faculty of Electrical Engineering and Computing,

Support Vector Machines in Marketing Georgi Nalbantov MICC, Maastricht University.

USE RECIPE INGREDIENTS TO PREDICT THE CATEGORY OF CUISINE Group 7 – MEI, Yan & HUANG, Chenyu.

Ivica Dimitrovski 1, Dragi Kocev 2, Suzana Loskovska 1, Sašo Džeroski 2 1 Faculty of Electrical Engineering and Information Technologies, Department of.

Using Classification Trees to Decide News Popularity

Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features 王荣 14S

Virtual Examples for Text Classification with Support Vector Machines Manabu Sassano Proceedings of the 2003 Conference on Emprical Methods in Natural.

Introduction The aim of this work is investigating the differences of Heart Rate Variability (HRV) features between normal subjects and patients suffering.

Combining multiple learners Usman Roshan. Decision tree From Alpaydin, 2010.

Advanced Gene Selection Algorithms Designed for Microarray Datasets Limitation of current feature selection methods: –Ignores gene/gene interaction: single.

Next, this study employed SVM to classify the emotion label for each EEG segment. The basic idea is to project input data onto a higher dimensional feature.

Neural networks (2) Reminder Avoiding overfitting Deep neural network Brief summary of supervised learning methods.

Mustafa Gokce Baydogan, George Runger and Eugene Tuv INFORMS Annual Meeting 2011, Charlotte A Bag-of-Features Framework for Time Series Classification.

BSP: An iterated local search heuristic for the hyperplane with minimum number of misclassifications Usman Roshan.

A WEB PLATFORM FOR ANALYSIS OF MULTIVARIATE HETEROGENEOUS BIOMEDICAL TIME - SERIES - A PRELIMINARY REPORT Alan Jovic, Davor Kukolja, Kresimir Jozic, Marko.

Hybrid Ant Colony Optimization-Support Vector Machine using Weighted Ranking for Feature Selection and Classification.

Classification of GPCRs at Family and Subfamily Levels Using Decision Trees & Naïve Bayes Classifiers Betty Yee Man Cheng Language Technologies Institute,

Feature learning for multivariate time series classification Mustafa Gokce Baydogan * George Runger * Eugene Tuv † * Arizona State University † Intel Corporation.

Combining Bagging and Random Subspaces to Create Better Ensembles

Recognition of bumblebee species by their buzzing sound

Debesh Jha and Kwon Goo-Rak

In Search of the Optimal Set of Indicators when Classifying Histopathological Images Catalin Stoean University of Craiova, Romania

Recognition of arrhythmic Electrocardiogram using Wavelet based Feature Extraction Authors Atrija Singh Dept. Of Electronics and Communication Engineering.

Trees, bagging, boosting, and stacking

Supervised Time Series Pattern Discovery through Local Importance

Source: Procedia Computer Science（2015）70:

Avdesh Mishra, Manisha Panta, Md Tamjidul Hoque, Joel Atallah

Machine Learning Week 1.

Machine Learning in Practice Lecture 26

Alan Jovic1, Kresimir Jozic2, Davor Kukolja1,

Support Vector Machine _ 2 (SVM)

Machine Learning with Clinical Data

Modeling IDS using hybrid intelligent systems

Presentation transcript:

Decision tree ensembles in biomedical time-series classifaction Alan Jović1, Karla Brkić1, Nikola Bogunović1 1 University of Zagreb, Faculty of Electrical Engineering and Computing, Unska 3, 10000 Zagreb, Croatia, E-mail: {alan.jovic, karla.brkic, nikola.bogunovic}@fer.hr Transformations and feature extraction Biomedical time-series Biomedical time-series datasets Transformations: Characteristics: Fourier transform Hilbert transform Wavelet transform Binary class or multiclass From several features to several hundred features Feature vectors numbers vary Very few open, referential datasets available Biomedical time-series prepared datasets Features: Morphological Statistical Frequency Time-frequency Nonlinear + Personal data Difficult results comparison: Different data Different disorders Different classifiers Goal: Demonstrate the potential of decision tree ensembles in biomedical time series classification, compare to SVM – still preliminary results Three datasets Seven classifiers Classification results Arrhythmia dataset (UCI repository) - 13 classes, 279 features, 452 instances AdaBoost+C4.5 (AB) MultiBoost+C4.5 (MB) Random forest (RF) Rotation forest (RTF) SVM SMO-based - Linear - Squared polynomial - Radial HRV-based arrhythmia (PhysioNet, two databases) (HRV) - 9 classes, 230 features, 8843 instances HRV-based heart disorder (PhysioNet, six databases) (CHF) - 3 classes (normal, arrhytmic, CHF), 237 features, 3317 instances Statistically significant win/loss/tie, α=0.05, Student’s paired t-test for 9x10-fold crossvalidation (first 10-fold iteration used for finding optimal model parameters) Conclusion Preliminary results strongly support the use of decision tree ensembles to improve model accuracy in biomedical time-series classification, especially AdaBoost+C4.5 and MultiBoost+C4.5. Further investigations are necessary. Average classification model construction times (in seconds) for the three datasets