Statistical Challenges in “Big Data” Human Neuroimaging

Slides:



Advertisements
Similar presentations
Multiple testing Justin Chumbley Laboratory for Social and Neural Systems Research Institute for Empirical Research in Economics University of Zurich With.
Advertisements

07/01/15 MfD 2014 Xin You Tai & Misun Kim
Multiple comparison correction Methods & models for fMRI data analysis 29 October 2008 Klaas Enno Stephan Branco Weiss Laboratory (BWL) Institute for Empirical.
Preference Distributions of Primary Motor Cortex Neurons Reflect Control Solutions Optimized for Limb Biomechanics Timothy P. Lillicrap, Stephen H. Scott.
Spatial Smoothing and Multiple Comparisons Correction for Dummies Alexa Morcom, Matthew Brett Acknowledgements.
Statistical Analysis An Introduction to MRI Physics and Analysis Michael Jay Schillaci, PhD Monday, April 7 th, 2007.
Adaptation to Natural Binocular Disparities in Primate V1 Explained by a Generalized Energy Model Ralf M. Haefner, Bruce G. Cumming Neuron Volume 57, Issue.
Reading the Book of Memory: Sparse Sampling versus Dense Mapping of Connectomes H. Sebastian Seung Neuron Volume 62, Issue 1, Pages (April 2009)
Volume 63, Issue 3, Pages (August 2009)
Lesion Mapping of Cognitive Abilities Linked to Intelligence
How to Characterize the Function of a Brain Region
Volume 60, Issue 5, Pages (December 2008)
Volume 47, Issue 6, Pages (September 2005)
Luke Clark, Andrew J. Lawrence, Frances Astley-Jones, Nicola Gray 
Avi Mendelsohn, Yossi Chalamish, Alexander Solomonovich, Yadin Dudai 
Volume 64, Issue 3, Pages (November 2009)
Volume 63, Issue 2, Pages (July 2009)
Volume 17, Issue 5, Pages (November 1996)
Linking Electrical Stimulation of Human Primary Visual Cortex, Size of Affected Cortical Area, Neuronal Responses, and Subjective Experience  Jonathan.
Frontal Cortex and the Discovery of Abstract Action Rules
Sam Norman-Haignere, Nancy G. Kanwisher, Josh H. McDermott  Neuron 
John-Dylan Haynes, Jon Driver, Geraint Rees  Neuron 
Disruption of Large-Scale Brain Systems in Advanced Aging
Cognitive Modulation of Olfactory Processing
Rajeev D.S. Raizada, Russell A. Poldrack  Neuron 
Volume 87, Issue 3, Pages (August 2015)
Volume 87, Issue 1, Pages (July 2015)
Volume 94, Issue 4, Pages e7 (May 2017)
Volume 63, Issue 3, Pages (August 2009)
Sheng Li, Stephen D. Mayhew, Zoe Kourtzi  Neuron 
Timothy J. Vickery, Marvin M. Chun, Daeyeol Lee  Neuron 
Volume 80, Issue 2, Pages (October 2013)
Reinforcement Learning Signal Predicts Social Conformity
Human Hippocampal Dynamics during Response Conflict
Volume 62, Issue 5, Pages (June 2009)
A Core System for the Implementation of Task Sets
Vincent B. McGinty, Antonio Rangel, William T. Newsome  Neuron 
Hedging Your Bets by Learning Reward Correlations in the Human Brain
Attentional Modulations Related to Spatial Gating but Not to Allocation of Limited Resources in Primate V1  Yuzhi Chen, Eyal Seidemann  Neuron  Volume.
Implicit Attentional Selection of Bound Visual Features
Cortical Mechanisms of Smooth Eye Movements Revealed by Dynamic Covariations of Neural and Behavioral Responses  David Schoppik, Katherine I. Nagel, Stephen.
Volume 66, Issue 4, Pages (May 2010)
Yoni K. Ashar, Jessica R. Andrews-Hanna, Sona Dimidjian, Tor D. Wager 
Deciphering Cortical Number Coding from Human Brain Activity Patterns
Volume 75, Issue 1, Pages (July 2012)
Jack Grinband, Joy Hirsch, Vincent P. Ferrera  Neuron 
Talia Konkle, Aude Oliva  Neuron  Volume 74, Issue 6, Pages (June 2012)
Dharshan Kumaran, Hans Ludwig Melo, Emrah Duzel  Neuron 
Volume 45, Issue 4, Pages (February 2005)
Volume 88, Issue 3, Pages (November 2015)
Dharshan Kumaran, Eleanor A. Maguire  Neuron 
Resolving Emotional Conflict: A Role for the Rostral Anterior Cingulate Cortex in Modulating Activity in the Amygdala  Amit Etkin, Tobias Egner, Daniel.
Volume 56, Issue 1, Pages (October 2007)
Joseph T. McGuire, Matthew R. Nassar, Joshua I. Gold, Joseph W. Kable 
BOLD fMRI Correlation Reflects Frequency-Specific Neuronal Correlation
Volume 63, Issue 5, Pages (September 2009)
Ryota Kanai, Tom Feilden, Colin Firth, Geraint Rees  Current Biology 
Subliminal Instrumental Conditioning Demonstrated in the Human Brain
Value-Based Modulations in Human Visual Cortex
Timing, Timing, Timing: Fast Decoding of Object Information from Intracranial Field Potentials in Human Visual Cortex  Hesheng Liu, Yigal Agam, Joseph.
Volume 68, Issue 1, Pages (October 2010)
Elena A. Allen, Erik B. Erhardt, Vince D. Calhoun  Neuron 
Megan E. Speer, Jamil P. Bhanji, Mauricio R. Delgado  Neuron 
Predictive Neural Coding of Reward Preference Involves Dissociable Responses in Human Ventral Midbrain and Ventral Striatum  John P. O'Doherty, Tony W.
Laurie S. Glezer, Xiong Jiang, Maximilian Riesenhuber  Neuron 
Perceptual Classification in a Rapidly Changing Environment
Volume 66, Issue 4, Pages (May 2010)
Lior Reich, Marcin Szwed, Laurent Cohen, Amir Amedi  Current Biology 
Patterns of fMRI Activity Dissociate Overlapping Functional Brain Areas that Respond to Biological Motion  Marius V. Peelen, Alison J. Wiggett, Paul E.
Volume 63, Issue 2, Pages (July 2009)
Presentation transcript:

Statistical Challenges in “Big Data” Human Neuroimaging Stephen M. Smith, Thomas E. Nichols  Neuron  Volume 97, Issue 2, Pages 263-268 (January 2018) DOI: 10.1016/j.neuron.2017.12.018 Copyright © 2017 Elsevier Inc. Terms and Conditions

Figure 1 Relationship between Sample Size and Number of Variables Tested, Holding Statistical Power Constant The plot shows the sample size N needed to attain 80% power to detect 1 true association while controlling the familywise error rate (the chance of one or more false positives) over K tests. Effect size is measured in terms of percentage of variance explained (r2), and is shown for three small values, 1% (corresponding to a correlation of r = 0.1), 0.1%, and 0.01%. While large sample sizes are needed for just 1 test, as N increases K grows exponentially. Roughly, squaring the number of tests requires only a doubling of the sample size. Neuron 2018 97, 263-268DOI: (10.1016/j.neuron.2017.12.018) Copyright © 2017 Elsevier Inc. Terms and Conditions

Figure 2 Voxelwise Analyses of the Faces-Shapes Contrast in the UK Biobank Task-fMRI Data, from 12,600 Subjects The % signal change color overlay shows the fMRI signal change associated with the faces-shapes contrast, masked by significant voxels from mixed-effects modeling of the group-average signal (all maps shown here conservatively corrected for multiple comparisons across 1.8 million voxels using Bonferroni correction, p < 0.05). This threshold excludes only 19% of voxels, i.e., showing a significant response to the task in most of the brain. The maximum statistical effect size (Cohen’s d) is 1.57, equivalent to a one-group T statistic of 176.2. The Sex overlay shows significant correlation of the faces-shapes effect with the confound factor of sex; orange/blue coloring shows correlation estimated after controlling for head size, while copper/green coloring is without this adjustment. The Head size overlay shows significant correlation with volumetric head size; orange/blue coloring shows correlation estimated after controlling for sex, and copper/green coloring is without adjustment. Because sex and head size are highly correlated (r = 0.63), adjustment makes a great difference, eliminating a significant effect in some regions. Over all five results shown here, the minimal detectable correlation was r = 0.049. (Image intensities truncated for presentation, percentage of signal change truncated at ±0.5%, correlation intensities at ±0.08; full ranges listed in the figure.) Neuron 2018 97, 263-268DOI: (10.1016/j.neuron.2017.12.018) Copyright © 2017 Elsevier Inc. Terms and Conditions

Figure 3 14 Million Univariate Association Tests between IDPs and Non-Brain-Imaging Variables in UK Biobank, 14,500 Subjects In the Manhattan-style plot, 5,456 non-imaging variable are arranged on the x axis, with 16 groups of variable types. For each variable, 7 –log10 p values are plotted—the most significant association of that variable with each of 7 different classes of imaging-derived phenotypes (IDPs). Approximately 100,000 associations are FDR significant, and 15,000 are Bonferroni significant. The histograms show the distributions of correlation size (across all 14 million tests); depending on thresholding method, the minimum detectable r is 0.03–0.05, meaning that for FDR thresholding an association with 0.1% variance explained is detectable. Neuron 2018 97, 263-268DOI: (10.1016/j.neuron.2017.12.018) Copyright © 2017 Elsevier Inc. Terms and Conditions