SIFGD: Setaria italica Functional Genomics Database Qi You, Liwei Zhang, Xin Yi, Zhenghai Zhang, Wengying Xu, Zhen Su  Molecular Plant  Volume 8, Issue 6, Pages 967-970 (June 2015) DOI: 10.1016/j.molp.2015.02.001 Copyright © 2015 The Author Terms and Conditions

Figure 1 Structure of the Setaria italica Functional Genome Database. The structure of SIFGD displays the main contents of the database. (A) The quick search page for gene information, metabolic pathways, and ortholog transformation. (B) The motif analysis page for motif scans and significance analysis. (C) A download page. (D) The BLAST search page. (E) The gbrowse_syn page for investigating cds synteny and genomic synteny relationships between two genome versions (Bennetzen et al., 2012; Zhang et al., 2012). (F) The genome browser page for integrating gene structure, ESTs, microRNAs, RNA-seq, and miRNA-seq data. (G) An information page showing one microRNA with its sequence, location, target genes, and secondary structure. (H) A table listing information for six gene families, including carbohydrate-active enzymes, transcriptional regulators, kinases, ubiquitin proteasome components, cytochrome P450 enzymes, and EAR motif-containing proteins. (I) Detail for the ubiquitin subfamily (UBC), including gene id, prediction method, and Pfam domain. (J) An example of an information page for one interesting gene containing several types of information such as location, orthologous genes, gene family designation, domains, associated pathway(s), and expression profiles. (K) An example of a page for one metabolic pathway showing the participated enzymes and wiring diagrams. Molecular Plant 2015 8, 967-970DOI: (10.1016/j.molp.2015.02.001) Copyright © 2015 The Author Terms and Conditions