Agnar Helgason, Sigrún Sigurðardóttir, Jeffrey R

Slides:



Advertisements
Similar presentations
Previous Estimates of Mitochondrial DNA Mutation Level Variance Did Not Account for Sampling Error: Comparing the mtDNA Genetic Bottleneck in Mice and.
Advertisements

Functional Analysis of the Neurofibromatosis Type 2 Protein by Means of Disease- Causing Point Mutations Renee P. Stokowski, David R. Cox The American.
A Haplotype at STAT2 Introgressed from Neanderthals and Serves as a Candidate of Positive Selection in Papua New Guinea  Fernando L. Mendez, Joseph C.
The Genetic Legacy of the Mongols
Forensic informativity of domestic dog mtDNA control region sequences
Montgomery Slatkin  The American Journal of Human Genetics 
The Structure of Common Genetic Variation in United States Populations
Genomic Patterns of Homozygosity in Worldwide Human Populations
Analysis of Mitochondrial DNA Diversity in the Aleuts of the Commander Islands and Its Implications for the Genetic History of Beringia  Olga A. Derbeneva,
Independent Histories of Human Y Chromosomes from Melanesia and Australia  Manfred Kayser, Silke Brauer, Gunter Weiss, Wulf Schiefenhövel, Peter A. Underhill,
A Mitochondrial Stratigraphy for Island Southeast Asia
CYP3A Variation and the Evolution of Salt-Sensitivity Variants
Ancestral Asian Source(s) of New World Y-Chromosome Founder Haplotypes
Phylogeographic Differentiation of Mitochondrial DNA in Han Chinese
The Ancestry of Brazilian mtDNA Lineages
The Central Siberian Origin for Native American Y Chromosomes
Miroslava V. Derenko, Tomasz Grzybowski, Boris A
An Extensive Analysis of Y-Chromosomal Microsatellite Haplotypes in Globally Dispersed Human Populations  Manfred Kayser, Michael Krawczak, Laurent Excoffier,
Early Austronesians: Into and Out Of Taiwan
Montgomery Slatkin  The American Journal of Human Genetics 
Do the Four Clades of the mtDNA Haplogroup L2 Evolve at Different Rates?  Antonio Torroni, Chiara Rengo, Valentina Guida, Fulvio Cruciani, Daniele Sellitto,
A Signal, from Human mtDNA, of Postglacial Recolonization in Europe
A Combined Linkage-Physical Map of the Human Genome
Haplotypes and Linkage Disequilibrium at the Phenylalanine Hydroxylase Locus, PAH, in a Global Representation of Populations  Judith R. Kidd, Andrew J.
The Phylogeography of Brazilian Y-Chromosome Lineages
MtDNA and the Islands of the North Atlantic: Estimating the Proportions of Norse and Gaelic Ancestry  Agnar Helgason, Eileen Hickey, Sara Goodacre, Vidar.
Association Mapping in Structured Populations
Ethiopian Mitochondrial DNA Heritage: Tracking Gene Flow Across and Around the Gate of Tears  Toomas Kivisild, Maere Reidla, Ene Metspalu, Alexandra Rosa,
MtDNA Haplogroup X: An Ancient Link between Europe/Western Asia and North America?  Michael D. Brown, Seyed H. Hosseini, Antonio Torroni, Hans-Jürgen.
The Matrilineal Ancestry of Ashkenazi Jewry: Portrait of a Recent Founder Event  Doron M. Behar, Ene Metspalu, Toomas Kivisild, Alessandro Achilli, Yarin.
The Dual Origin of the Malagasy in Island Southeast Asia and East Africa: Evidence from Maternal and Paternal Lineages  Matthew E. Hurles, Bryan C. Sykes,
A Populationwide Coalescent Analysis of Icelandic Matrilineal and Patrilineal Genealogies: Evidence for a Faster Evolutionary Rate of mtDNA Lineages than.
Maternal History of Oceania from Complete mtDNA Genomes: Contrasting Ancient Diversity with Recent Homogenization Due to the Austronesian Expansion  Ana T.
In Search of Geographical Patterns in European Mitochondrial DNA
Variant Association Tools for Quality Control and Analysis of Large-Scale Sequence and Genotyping Array Data  Gao T. Wang, Bo Peng, Suzanne M. Leal  The.
Ida Moltke, Matteo Fumagalli, Thorfinn S. Korneliussen, Jacob E
High-Resolution Analysis of Human Y-Chromosome Variation Shows a Sharp Discontinuity and Limited Gene Flow between Northwestern Africa and the Iberian.
CYP3A Variation and the Evolution of Salt-Sensitivity Variants
Estimating Scandinavian and Gaelic Ancestry in the Male Settlers of Iceland  Agnar Helgason, Sigrún Sigurðardóttir, Jayne Nicholson, Bryan Sykes, Emmeline.
Lluís Quintana-Murci, Raphaëlle Chaix, R. Spencer Wells, Doron M
Mitochondrial Haplogroup U5b3: A Distant Echo of the Epipaleolithic in Italy and the Legacy of the Early Sardinians  Maria Pala, Alessandro Achilli, Anna.
Characteristics of Neutral and Deleterious Protein-Coding Variation among Individuals and Populations  Wenqing Fu, Rachel M. Gittelman, Michael J. Bamshad,
Contrasting Effects of Natural Selection on Human and Chimpanzee CC Chemokine Receptor 5  Stephen Wooding, Anne C. Stone, Diane M. Dunn, Srinivas Mummidi,
Y-Chromosomal DNA Variation in Pakistan
Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families  Anne-Mai Ilumäe, Maere Reidla, Marina.
Geographic Patterns of mtDNA Diversity in Europe
A Genetic Landscape Reshaped by Recent Events: Y-Chromosomal Insights into Central Asia  Tatiana Zerjal, R. Spencer Wells, Nadira Yuldasheva, Ruslan Ruzibakiev,
Gene Conversion between the X Chromosome and the Male-Specific Region of the Y Chromosome at a Translocation Hotspot  Zoë H. Rosser, Patricia Balaresque,
Olga A. Derbeneva, Elena B. Starikovskaya, Douglas C. Wallace, Rem I
Complex Signatures of Natural Selection at the Duffy Blood Group Locus
Shuhua Xu, Wei Huang, Ji Qian, Li Jin 
Molecular Analysis of the β-Globin Gene Cluster in the Niokholo Mandenka Population Reveals a Recent Origin of the βS Senegal Mutation  Mathias Currat,
The Emerging Tree of West Eurasian mtDNAs: A Synthesis of Control-Region Sequences and RFLPs  Vincent Macaulay, Martin Richards, Eileen Hickey, Emilce.
Phylogenetic Network for European mtDNA
Lluís Quintana-Murci, Raphaëlle Chaix, R. Spencer Wells, Doron M
Reduced-Median-Network Analysis of Complete Mitochondrial DNA Coding-Region Sequences for the Major African, Asian, and European Haplogroups  Corinna.
Phylogenetic and Familial Estimates of Mitochondrial Substitution Rates: Study of Control Region Mutations in Deep-Rooting Pedigrees  Evelyne Heyer, Ewa.
Evolutionary History of the ADRB2 Gene in Humans
Y-Chromosomal Diversity in Lebanon Is Structured by Recent Historical Events  Pierre A. Zalloua, Yali Xue, Jade Khalife, Nadine Makhoul, Labib Debiane,
Leslie S. Emery, Kevin M. Magnaye, Abigail W. Bigham, Joshua M
Haplotypes and Linkage Disequilibrium at the Phenylalanine Hydroxylase Locus, PAH, in a Global Representation of Populations  Judith R. Kidd, Andrew J.
Anne C. Stone, Mark Stoneking  The American Journal of Human Genetics 
On the Etruscan Mitochondrial DNA Contribution to Modern Humans
Lactase Haplotype Diversity in the Old World
Matthew A. Saunders, Jeffrey M. Good, Elizabeth C. Lawrence, Robert E
Genotype-Imputation Accuracy across Worldwide Human Populations
A Highly Unstable Recent Mutation in Human mtDNA
Messages through Bottlenecks: On the Combined Use of Slow and Fast Evolving Polymorphic Markers on the Human Y Chromosome  Peter de Knijff  The American.
A Haplotype at STAT2 Introgressed from Neanderthals and Serves as a Candidate of Positive Selection in Papua New Guinea  Fernando L. Mendez, Joseph C.
Haplotypes in the Dystrophin DNA Segment Point to a Mosaic Origin of Modern Human Diversity  Ewa Ziętkiewicz, Vania Yotova, Dominik Gehl, Tina Wambach,
Presentation transcript:

mtDNA and the Origin of the Icelanders: Deciphering Signals of Recent Population History  Agnar Helgason, Sigrún Sigurðardóttir, Jeffrey R. Gulcher, Ryk Ward, Kári Stefánsson  The American Journal of Human Genetics  Volume 66, Issue 3, Pages 999-1016 (March 2000) DOI: 10.1086/302816 Copyright © 2000 The American Society of Human Genetics Terms and Conditions

Figure 1 Map of Europe, showing the populations included in this study. The colors show a classification of sampled populations into larger geographic regions. This grouping scheme is used in a number of analyses presented in this paper. The arrows show presumed routes of settlement from Scandinavia and the British Isles to Iceland between 870 and 930 ad. The North Atlantic Islands are situated between Iceland, Scotland, and Norway and are (from right to left on the map) the Shetland Islands, the Orkney Islands, and the Faroe Islands. The American Journal of Human Genetics 2000 66, 999-1016DOI: (10.1086/302816) Copyright © 2000 The American Society of Human Genetics Terms and Conditions

Figure 2 Representations in two-dimensional space of genetic distances between European geographic regions based on HVS1 and HVS2 lineage frequencies. The correspondence between the distances on two dimensional plots and those in the genetic distance matrices is (A) ∼98% and (B) ∼95%, respectively. The American Journal of Human Genetics 2000 66, 999-1016DOI: (10.1086/302816) Copyright © 2000 The American Society of Human Genetics Terms and Conditions

Figures 3 Representations in two-dimensional space of genetic distances between European populations based on an AMOVA. For both A and B, the correspondence between the distances on two-dimensional plots and those in the distance matrices is ∼80%. The American Journal of Human Genetics 2000 66, 999-1016DOI: (10.1086/302816) Copyright © 2000 The American Society of Human Genetics Terms and Conditions

Figure 4 Median-joining network of Icelandic mtDNA lineages for HVS1 (16028–16519), HVS2 (1–297), and the RFLP markers 7028, 9052, and 12308. Circles are proportional to lineage frequencies, in which the smallest circles represent single-copy lineages and the largest circle represents 21 copies of the same lineage. Bold circle outlines indicate lineages unique to the Icelanders, according to the comparative HVS1 data set described in table 1. Lines represent substitutions and are proportional to the number of substitutions between lineages. Transitions are indicated on the lines by site number; transversions are indicated by site number and base. Reticulations in the network, in which it has been impossible to resolve a recurrent mutation at one or more sites, are represented by parallelogram-like shapes. In such cases, the parallel lines represent possible mutations at the same site. Dotted lines indicate unlikely mutational routes. The haplogroup membership of lineages is indicated by labels at the edges of the network and by the color-coding of circles. The position of the Cambridge reference sequence is indicated by an asterisk. The American Journal of Human Genetics 2000 66, 999-1016DOI: (10.1086/302816) Copyright © 2000 The American Society of Human Genetics Terms and Conditions

Figure 5 Bar chart showing the pattern of lineage sharing between the Icelanders and other European populations, classed into eight geographic regions. The full height of each column represents the number of Icelandic lineages that are found in the specified region. The blackened area represents the cumulative increase in the number of Icelandic lineages accounted for when regions are combined sequentially according to geographic proximity to Iceland (from left to right on the figure). This amounts to not counting a shared lineage found in a region after the same lineage has been found in a previous region. Finally, the diagonally shaded area represents the number of Icelandic lineages that are shared only with a single region in the current data set. The American Journal of Human Genetics 2000 66, 999-1016DOI: (10.1086/302816) Copyright © 2000 The American Society of Human Genetics Terms and Conditions

Figure 6 Bar chart showing the geographic distribution of putative ancestral lineages to Icelandic private lineages. The full height of each column represents the number of Icelandic private lineages that can be accounted for by ancestral lineages sampled from the specified region. The blackened area represents the cumulative increase in the number of Icelandic private lineages that can be accounted for by ancestral lineages when regions are combined sequentially according to geographic proximity to Iceland (from left to right on the figure). Hence, once an Icelandic private lineage has been accounted for by an ancestral lineage in one region, it is excluded from the blackened area of columns for subsequent regions. The diagonally shaded area represents the number of Icelandic private lineages that can be accounted for only by an ancestral lineage from a single geographic region in the current data set. The American Journal of Human Genetics 2000 66, 999-1016DOI: (10.1086/302816) Copyright © 2000 The American Society of Human Genetics Terms and Conditions