Volume 16, Issue 11, Pages 2846-2854 (September 2016) Hepatitis B Virus X Protein Promotes Degradation of SMC5/6 to Enhance HBV Replication  Christopher M. Murphy, Yanping Xu, Feng Li, Kouki Nio, Natalia Reszka-Blanco, Xiaodong Li, Yaxu Wu, Yanbao Yu, Yue Xiong, Lishan Su  Cell Reports  Volume 16, Issue 11, Pages 2846-2854 (September 2016) DOI: 10.1016/j.celrep.2016.08.026 Copyright © 2016 The Authors Terms and Conditions

Cell Reports 2016 16, 2846-2854DOI: (10.1016/j.celrep.2016.08.026) Copyright © 2016 The Authors Terms and Conditions

Figure 1 Identification of CRL4-HBx Substrates by TAP/MS and CRL Inhibition (A) Experimental design to identify the substrate of CRL4HBx. HepG2 cells inducibly expressing FLAG-SBP-HBx were induced with doxycycline and treated with MLN4924 to stabilize HBx-substrate interactions, which were then purified and analyzed by LC-MS/MS. (B) Spectral counts of proteins identified under each condition were compared to identify potential CRL4HBx substrates. Upper table: HBx interactions with the CRL4 E3 ligase. Lower table: proteins identified either exclusively or in greater amounts with MLN4924 treatment relative to DMSO are shown (potential substrates). The table shows the combined results from two separate experiments. For proteins identified in both experiments, the mean number of spectral counts is listed. (C) Substrate candidates were screened for HBx-induced instability 5 days after induction of HBx expression with 500 ng/ml doxycycline. (D) HEK293T cells were cotransfected with constructs expressing 3xFLAG-HBx, V5-tagged SMC5/6, or empty vector controls. After 41 hr, cells were treated, or not treated, with 1 μM MLN4924 and harvested 10 hr later. Total cell lysates (top) or FLAG immunoprecipitates (bottom) were then analyzed for the indicated proteins. (E) HepG2 cells inducibly expressing FLAG-SBP-HBx (FSH8) were briefly induced with 120 ng/ml doxycycline for 24 hr, and endogenous SMC5/6 was co-immunoprecipitated with HBx using anti-FLAG resin. Unmodified HepG2 cells (G2) were used as a negative control. Cell Reports 2016 16, 2846-2854DOI: (10.1016/j.celrep.2016.08.026) Copyright © 2016 The Authors Terms and Conditions

Figure 2 HBx Expression and HBV Infection Degrades SMC5/6 (A and B) Inducible HepG2-HBx-H5 cells were treated with a range of doxycycline concentrations (A) or for different lengths of time (B), and SMC5 and SMC6 levels were analyzed by immunoblot. (C) HEK293T cells were first transfected with control small interfering RNA (siRNA) or siRNA targeting indicated genes for 24 hr and transfected with FLAG-HBx for another 24 hr, followed by immunoblot analysis. Scr., scrambled siRNA (control). (D) HEK293T cells were transfected with FLAG-tagged HBx for 24 hr and then treated with MG132 (2 μM) for 24 hr, followed by cell lysis and SDS-PAGE. (E) Confocal microscopy of mock- and HBV-infected human hepatocytes stained with SMC6 (red) and HBc (green) antibodies and counterstained with DAPI. A representative view is shown, and arrows indicate cells where SMC6 is degraded by HBV infection. Scale bars, 20 μm. Intensities of nuclear SMC6 fluorescence were quantified from HBc+ and HBc− cells of multiple fields using ImageJ software. The relative SMC6 level in HBc+ cells was normalized to that of HBc− cells in the same view field. The average of relative SMC6 intensity was calculated from 18 HBc+ and 18 HBc− cells. ∗∗∗p < 0.001 (t test); bars, SEM. WT, wild-type. (F) Liver samples from NRG-FAH-hu hepatocyte mice with human liver reconstitution (>60% human reconstitution) were analyzed for SMC6 levels by immunoblot in the presence or absence of HBV infection. HBV titers for mice #3 and #4 were 7.47 × 1011/ml and 2.73 × 108 GE per ml, respectively. Cell Reports 2016 16, 2846-2854DOI: (10.1016/j.celrep.2016.08.026) Copyright © 2016 The Authors Terms and Conditions

Figure 3 SMC5/6 Is a Direct Ubiquitylation Substrate of CRL4-HBx (A) Wild-type, but not DDB1-binding-deficient R96E mutant, HBx promotes SMC5 and SMC6 polyubiquitylation in vivo. HEK293T cells were transfected with the indicated plasmids and treated with MG132 4 hr before harvest. Whole-cell lysates were prepared under denaturing conditions, and ubiquitylation (Ub) of SMC5 and SMC6 was examined by coupled IP-western blot analysis. (B) Knockdown of DDB1, CUL4A, or CUL4B inhibits HBx-promoted SMC5 and SMC6 polyubiquitylation in vivo. HEK293T cells were first transfected with indicated siRNA oligonucleotides for 24 hr, then transfected with plasmids expressing the indicated proteins for another 48 hr, and treated with MG132 4 hr before harvest. Knockdown was verified by immunoblotting with whole-cell lysate. In vivo, SMC5 or SMC6 ubiquitylation was determined by IP-western blot analysis under denaturing conditions. (C) HEK293T cells were transfected with indicated plasmids and treated with MG132 before harvest. Whole-cell lysates were prepared under denaturing conditions. Endogenous SMC6 was precipitated using a SMC6 antibody (Ab.), and the ubiquitylation was examined by western blot analysis using an antibody recognizing K48-linked polyubiquitin chain. (D and E) Wild-type (WT), but not DDB1-binding-deficient R96E mutant, HBx promotes SMC5 and SMC6 polyubiquitylation by the CRL4 E3 ligase in vitro. Immunopurified SMC5 (D) or SMC6 (E) protein was incubated with a mixture of CUL4A and CUL4B immune-complexes and purified HBx in a buffer containing recombinant ubiquitin, E1, E2, and ATP. Reactions were terminated by the addition of SDS loading buffer, followed by SDS-PAGE and immunoblot with the indicated antibodies. Cell Reports 2016 16, 2846-2854DOI: (10.1016/j.celrep.2016.08.026) Copyright © 2016 The Authors Terms and Conditions

Figure 4 HBx Targets SMC5/6 to Enhance HBV Gene Expression and HBV Replication (A) Knockdown of SMC5 or SMC6 enhances HBVΔX mcHBV-GLuc gene expression. HepG2-HBx-H5 cells were transfected with HBVΔX minicircle (mc) cccDNA, subcultured into 96-well plates, and then transduced with lentivirus encoding the shRNA indicated. GLuc activity in the culture supernatant was analyzed after 14 days. HBx expression was induced, where indicated, by the addition of doxycycline (400 ng/μl). RLU, relative light unit. ∗∗∗p < 0.001. (B) Expression of dominant-negative SMC6(K82E) rescues expression from HBVΔX mcHBV-GLuc cccDNA. HepG2-HBx-H5 cells were co-transfected with HBVΔX mcHBV-GLuc cccDNA and the indicated expression constructs. Luciferase was assayed after 8 days. ∗∗∗p < 0.001. (C–F) Knockdown of SMC5 or SMC6 in HepG2-NTCP cells enhanced replication of the HBVΔX mutant virus but had little effect on wild-type HBV virus. HepG2-NTCP cells were transduced with lentivirus expressing shRNA targeting SMC5, SMC6, or a non-target control sequence (shCtrl). After selection, transduced cells were infected with wild-type or ΔX HBV. Media were collected every other day, and HBeAg in the culture media was analyzed by ELISA at the times indicated (C and D). HBV replication was further confirmed by measuring HBsAg by ELISA at 9 days post-infection (E). ∗∗∗p < 0.001. The extent to which HBx promoted HBV replication in each cell line was calculated by dividing the HBsAg level from wild-type HBV-infected cells by that from HBVΔX-infected cells (F). Bars indicate SEM (A–D) or SD (E). Cell Reports 2016 16, 2846-2854DOI: (10.1016/j.celrep.2016.08.026) Copyright © 2016 The Authors Terms and Conditions