Heat map displaying the abundances of bacterial families identified on plastics particles collected from the North Atlantic Subtropical Gyre (NASG, samples.

Slides:



Advertisements
Similar presentations
16S rRNA gene abundance and total gene expression of Tannerella species in healthy patient and periodontitis patient samples. 16S rRNA gene abundance and.
Advertisements

Boxplots displaying relative percent abundance of consistent abundance-based microbiome members present in the tissue, mucus, and holobiont (Holo) fractions.
Taxonomic composition of subway microbial communities.
Microbial community dissimilarity.
Relative abundances of the top 10 most abundant OTUs across all fish samples are shown along with the data from the probiotic B. pumilus RI06-95 (OTU 3673)
Effect of protocol modifications.
The butyrate-producing community during disturbance.
Quantification of antibiotic resistance marker and virulence factor abundances on subway surfaces. Quantification of antibiotic resistance marker and virulence.
Fractions of 16S rRNA genes from bacteria (top panel) and archaea (bottom panel) in public databases from primer-amplified metagenomes (with and without.
Formula feeding affects the resistome.
Bacterial biomarkers associated with disease severity.
Differential abundance of bacterial families.
(a) PCoA of the abundance of unique OTUs per sample from the 16S marker gene sequencing data from the AGP data repository (small spheres) and the San Diego.
Microbial diversity of the 10 body locations sampled.
Rank abundance plots by taxonomic genus assignments for metagenomic data (top three rows) and metatranscriptomic data (bottom two rows). Rank abundance.
Selected KEGG genes that were significantly more abundant (>2 log2-fold change; FDR-adjusted P < 0.005) in plastic-associated metagenomic libraries than.
Gene content and order of the clade B-specific GT-rich gene cluster.
Bacteroidetes bacteria are the main contributors to LPS biosynthesis in the human gut microbiome. Bacteroidetes bacteria are the main contributors to LPS.
Correlation of mouse gene expression with bacterial gene expression.
(A) Heat maps illustrate the percent abundances of the most abundant genera (all OTUs taxonomically classified to the same genus were collapsed into a.
Distribution of the bacterial taxa that exhibit the greatest log fold changes in mean relative abundance. Distribution of the bacterial taxa that exhibit.
Categorization of the top 200 N
Positions of LSUCC isolates relative to matching OTUs within the top 60 ranks for the most successful experiment, CJ2, which is enlarged to allow for OTU.
Expression response of AT-rich genes to lanthanides.
Structure of benthic microbial communities of residential and industrial land use types before and after two rain events in urban waterways are shown.
Bacteria significantly correlated with DE miRNAs.
Relative abundances (percent) of genes that code for key enzymes involved in direct and indirect butyrate production during glucose fermentation at different.
SEM images of organisms on microplastic particle surfaces.
Locations of genes that exhibited decreased levels of distribution of the RpoZ-defective RNAP. The genes that showed decreased-level distribution of RpoZ-defective.
Distribution of microbial functions in urban waterways.
Maximum likelihood (ML) unrooted tree based on the full-length 16S rRNA genes (A) and 31 conserved single-copy genes (B) showing the phylogenetic position.
Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.
Example of amplicon performance in our presented workflow.
Proportion of 16S rRNA gene sequences in each category of phylogenetic novelty relative to cultures for each environment, by amplicons, metagenomes (without.
Experimental design. Experimental design. (a) Configuration of the sampling site in Flagstaff office 1. This configuration was similar to those set up.
Effects of FMT in sows and/or offspring on median relative abundances (%) of bacterial phyla (A and B) and genera (C and D) in offspring fecal samples.
Transcription of cellulolytic genes disaggregated by genome.
Study design and taxonomic composition of vaginal fluid metatranscriptomes in BV during and after treatment with metronidazole. Study design and taxonomic.
T7 transcripts increase relative to E. coli transcripts over time.
RNA abundance correlates with fitness.
A case study of RPCA feature loadings on real data sets; sponge (left; A and C) and sleep apnea (right; B and D). A case study of RPCA feature loadings.
Characterization of differentially expressed genes based on their COG classification. Characterization of differentially expressed genes based on their.
PKS distribution. PKS distribution. (A) Network map for known (purple) and unknown (yellow) PKS clusters, with the cluster number at each node and the.
Taxonomy assessment of metagenes with differential abundance as a result of the AXOS intervention. Taxonomy assessment of metagenes with differential abundance.
Gain of function in the gut microbiome as a consequence of AXOS ingestion. Gain of function in the gut microbiome as a consequence of AXOS ingestion. Overrepresented.
Benchmarks of OTU picking tools on artificial communities.
Relative abundance (RA) of individual phyla that are strongly correlated (|rs| = >0.6; q =
Box plots displaying the median, minimum, maximum, and first and third quartiles of the percentage of the 25 members of the core microbiome detected in.
Relationship between relative abundance and transcription/abundance ratio (logarithmic scales) of OTUs (brown), ZOTUs (turquoise), and population genomes.
Microbial differences found between TPC- and PBS-treated mice with lupus. Microbial differences found between TPC- and PBS-treated mice with lupus. (A)
Diversity of whale blow and seawater samples from minimum entropy decomposition (MED) node groupings (17), including observed number of MEDs, a relative.
Cyanophage-host interactions from metatranscriptomic data.
Reanalysis of an existing experiment using ADAGE
Sequence variation of 16S rRNA gene primer-binding sites.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
Expression profiles of 87 miRNAs expressed in SC
Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.
Enrichment of KEGG pathways in microbial genes in different samples.
P-network of 2,616 prokaryote genomes based on chromosomal sequences with rRNA genes removed. P-network of 2,616 prokaryote genomes based on chromosomal.
K-means clusters of T. elongatus and M
Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.
Host gene expression changes following exposure to the microbiota.
Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
Relative abundance and expression of the 10 most abundant MAGs in the bioreactor at day 96. Relative abundance and expression of the 10 most abundant MAGs.
Fig. 3 Postnatal assembly of the humanized gut microbiota.
Differences in the relative abundances of mycobacteria (as determined via 16S rRNA gene sequencing) across households in the United States on municipal.
16S rRNA-based phylogeny of sponge-associated cyanobacteria and chloroplasts. 16S rRNA-based phylogeny of sponge-associated cyanobacteria and chloroplasts.
ADAGE extracted features that represented sequence differences between strains. ADAGE extracted features that represented sequence differences between.
Relative abundances of bacterial/archaeal groups in 16S rRNA data set.
Presentation transcript:

Heat map displaying the abundances of bacterial families identified on plastics particles collected from the North Atlantic Subtropical Gyre (NASG, samples PP1 to PE3; abbreviations: PP, polypropylene; PE, polyethylene) (29) and the NPSG (samples 2a to 15b). Heat map displaying the abundances of bacterial families identified on plastics particles collected from the North Atlantic Subtropical Gyre (NASG, samples PP1 to PE3; abbreviations: PP, polypropylene; PE, polyethylene) (29) and the NPSG (samples 2a to 15b). The abundance of each bacterial family in a sample is relative to the total number of SSU rRNA gene reads in that sample assigned a prokaryotic family. Families with abundances of >1% in at least one sample are shown. The average percent identities of sample reads to their top hit (NASG/NPSG) are in parentheses. Cyano, Cyanobacteria. Jessica A. Bryant et al. mSystems 2016; doi:10.1128/mSystems.00024-16