Expression characterizations of PARK2.

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Expression characterizations of PARK2. Expression characterizations of PARK2. (A) Expression pattern in various tissues of chickens quantified using RT-qPCR. Results are given as expression fold change relative to the tight muscle, which exhibited the lowest level of expression. (B) Comparison of PARK2 mRNA level in the fat line (FL, n = 12) and the lean line (LL, n = 12) in the liver and the white adipose tissue (WAT). Results are expressed as the expression ratio relative to the LL ± SEM.*p < 5% and $p < 10% based on unpaired two-tailed Student t-test. (C) cDNA allelic ratio for two marker SNPs located on PARK2 for F1 birds obtained by crossing chicken FL and LL. SNP1 is located on chromosome 3 at 46,581,638 bp and SNP2 is on chromosome 3 at 46,581,695 bp. A total of five birds heterozygous on gDNA at those positions were considered for pyro-sequencing-based cDNA imbalance analyses. Each color and shape is associated with one individual. Down arrows indicate the average allelic ratio for each SNP. The top line stands for the expected allelic ratio in the case of a perfect cDNA allelic balance. The line included in the circle stands for the average value of the imbalance for a given SNP for five individuals. Significance of the allelic imbalance was assessed using a Mann-Whitney unpaired two-tailed nonparametric test to compare the observed allelic ratio with the expected one equal to 1 (i.e., in the case of a perfect balance). **p < 0.01. (D) Comparison of perigonadal fat mass (g) and PARK2 mRNA level in the liver and the white adipose tissue (WAT) of B6.V-Lepob/J mice (Ob, n = 8), KO for the gene encoding leptin, and their genetic background C57BL6/J (BL6, n = 8). For mRNA levels, results are expressed as the expression ratio relatively to the C57BL6/J ± SEM. *p < 0.05 and ***p < 0.001 based on unpaired two-tailed Student t-test. (E) Haplotype cluster frequencies for both chicken lines for the PARK2 selective sweep. The difference in color along the Y-axis gives the frequencies of each haplotype cluster. The difference in color along the X-axis has no meaning. The fixed haplotype is red here in the FL. Pierre-François Roux et al. G3 2015;5:517-529 ©2015 by Genetics Society of America