Bacterial biomarkers associated with disease severity.

Slides:



Advertisements
Similar presentations
Comparisons of “even” mock communities (a) and “staggered” mock communities (b) sequenced by MiSeqPE300 and HiSeqPE250. Comparisons of “even” mock communities.
Advertisements

16S rRNA gene abundance and total gene expression of Tannerella species in healthy patient and periodontitis patient samples. 16S rRNA gene abundance and.
Microbial community dissimilarity.
Frequency and abundance of microbial species in the cystic fibrosis (CF) lower airways metagenome. Frequency and abundance of microbial species in the.
Relative abundances of the top 10 most abundant OTUs across all fish samples are shown along with the data from the probiotic B. pumilus RI06-95 (OTU 3673)
Figure 3 Statistical approaches for the analysis of metabolomic data
Fig. 2. Associations between bacterial taxa abundance ascertained by fecal shotgun metagenomic sequencing and the fecal metabolome in healthy pediatric.
Dysbiosis of gut microbiota patterns in Chinese patients with IBD
Fig. 1. Bacterial communities shift during AD disease progression.
Alterations of the butyrate-producing potential in disease.
Analysis of changes in the host metabolome during M
The butyrate-producing community during disturbance.
Intervention effects on taxonomic and functional pathway diversity of the intestinal microbiome. Intervention effects on taxonomic and functional pathway.
Heat map displaying the abundances of bacterial families identified on plastics particles collected from the North Atlantic Subtropical Gyre (NASG, samples.
Differential abundance of bacterial families.
Microbial diversity of the 10 body locations sampled.
Fluoride affects stool-derived taxa found in the oral cavity.
Taxonomic composition of the baboon and human gut microbiota.
Succession of the butyrate-producing community after birth.
Nonmetric multidimensional scaling (NMDS) plots of fecal and biopsy sample-based Bray-Curtis distances computed from the relative abundances of the 258.
C. Kampmann, J. Dicksved, L. Engstrand, H. Rautelin 
Differences in microbiome between control and BPA-exposed rabbit offspring and dams according to linear discriminant analysis effect size (LEfSe). Differences.
Figure 2 DTI values between the hepatitis C group and controls(A) DTI FA values, (B) DTI diffusion values. *Statistically significant at FDR-adjusted p.
Performance of FDR methods on filtered microbiome data.
Distribution of the bacterial taxa that exhibit the greatest log fold changes in mean relative abundance. Distribution of the bacterial taxa that exhibit.
Classification accuracy for each taxon at different ranks of the NCBI taxonomy. Classification accuracy for each taxon at different ranks of the NCBI taxonomy.
Structure of benthic microbial communities of residential and industrial land use types before and after two rain events in urban waterways are shown.
Comparison of distal gut metabolite profiles between Egyptian and U. S
Bacteria significantly correlated with DE miRNAs.
Relative abundances (percent) of genes that code for key enzymes involved in direct and indirect butyrate production during glucose fermentation at different.
Phenotype gain and loss dynamics match protein family dynamics.
The similar shifts of gut microbiota in IBD across cohorts.
Functional enrichment of differentially expressed genes.
Comparison of the original ITS primer pair and the new, modified ITS primer pair. Comparison of the original ITS primer pair and the new, modified ITS.
Comparison of the modified 515f/806rB V4 primer pair and the 515f (modified)/926r primer pair. Comparison of the modified 515f/806rB V4 primer pair and.
Figure 3 Cladogram indicating the effect of disease-modifying therapies on the phylogenetic structure of MS patients' microbiota Cladogram indicating the.
(A and B) Relative (A) and mean (B) abundances of reference viral genomes across the continuum summarized by host type. (A and B) Relative (A) and mean.
PICRUSt analysis results of predicted functional pathways in the gut microbiota. PICRUSt analysis results of predicted functional pathways in the gut microbiota.
(a) Venn diagram showing the degree of overlap of the following different approaches: G-test for significant differences between groups (with Bonferroni.
Relative abundances of Akkermansia muciniphila organisms in all mouse groups. Relative abundances of Akkermansia muciniphila organisms in all mouse groups.
Cross-validation (CV) results for Crohn’s disease study: most frequent taxa and most frequent balances selected in the CV procedure compared to the global.
Experimental design. Experimental design. (a) Configuration of the sampling site in Flagstaff office 1. This configuration was similar to those set up.
Effects of FMT in sows and/or offspring on median relative abundances (%) of bacterial phyla (A and B) and genera (C and D) in offspring fecal samples.
Metabolite predictability across metabolic categories (A) and disease states (B) in the vaginal microbiome. Metabolite predictability across metabolic.
Log2-fold change in relative abundance of differentially abundant OTUs in PyOM300 and PyOM700 (a and b) and in Ps soil and Ar soil (c and d). Log2-fold.
Label frequency and average enrichment of taxa.
RNA abundance correlates with fitness.
Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.
Comparisons of “even” mock communities (a) and “staggered” mock communities (b) sequenced by MiSeqPE300 and HiSeqPE250. Comparisons of “even” mock communities.
Statistical chart of significantly differentially expressed genes
Microbial differences found between TPC- and PBS-treated mice with lupus. Microbial differences found between TPC- and PBS-treated mice with lupus. (A)
(A and B) Unweighted (A) and weighted (B) UniFrac clustering of three 16S rRNA hypervariable regions using fragment insertion SATé-enabled phylogenetic.
Distribution of ARGs in RefSoil genomes and plasmids.
Differences in Verrucomicrobia genera across plant community types.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
OTU and family-level changes in murine gut as a result of acarbose feeding on a high-starch diet. OTU and family-level changes in murine gut as a result.
Plot of relative abundance of Bifidobacterium animalis (A), Ruminococcus (Ruminococcaceae) (B), and Succinivibrio (Succinivibrionaceae) (C) (repeated-measures.
Comparison of the original 515f/806r primer pair and the new, modified 515f/806rB primer pair. Comparison of the original 515f/806r primer pair and the.
Spearman’s correlation analysis of microbiota and NMR spectra of the control and ciprofloxacin groups (A, C) or the vancomycin-imipenem group (B, D) after.
Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.
Functional microbiome differences between high-fat and standard chow diets. Functional microbiome differences between high-fat and standard chow diets.
Comparison between early-life and year 2 AMR levels.
LEfSe comparison analysis between the control and ciprofloxacin or vancomycin-imipenem groups at the end of antibiotic treatment (A or B, respectively)
Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.
Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.
Comparison of distal gut microbiota composition between Egyptian and U
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
Association between genome size and the dN/dS ratio for archaeal (A; n = 21) and bacterial (B; n = 28) genome pairs and association between coding density.
Relative abundance and expression of the 10 most abundant MAGs in the bioreactor at day 96. Relative abundance and expression of the 10 most abundant MAGs.
Infant skin and oral mycobiomes by birth mode.
Presentation transcript:

Bacterial biomarkers associated with disease severity. Bacterial biomarkers associated with disease severity. (A) Cladogram representing taxa with different abundances for CD activity. The size of each circle is proportionate to the abundance of the taxon. (B and C) Relative abundances of Clostridiales (B) and Enterobacteriaceae (C) in CD activity groups are shown. (D) Cladogram representing taxa with different abundances for UC activity. (E and F) Relative abundances of Clostridiales (E) and Enterobacteriaceae (F) in UC activity groups are shown. The statistical significance was determined with the Wilcoxon test and was adjusted using the false-discovery rate (FDR). **, P value < 0.01; ***, P value < 0.001. Youlian Zhou et al. mSystems 2018; doi:10.1128/mSystems.00188-17