Plateforme de Calcul pour les Sciences du Vivant Medical Images Platform Arnaud Fessy.

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Presentation transcript:

Plateforme de Calcul pour les Sciences du Vivant Medical Images Platform Arnaud Fessy

Plateforme de Calcul pour les Sciences du Vivant Plateforme de stockage d'images médicales 2 MIP functionalities Upload Visualization Anonymization Dicom metadata extraction Metadata registration In AMGA Operational functionalities : Quickly upload images on a Dicom server Multithreaded upload Visualize one or more Dicom images Functionalities : confidentiality, color inverse, zoom, multi frames, etc… Remove the confidential data from Dicom images Extract the medical data from the Dicom images Backup the Dicom data under text and xml formats Parse the medical data and to store them in AMGA Make possible to integrate the Grid aspect in the Web platform

Plateforme de Calcul pour les Sciences du Vivant Plateforme de stockage d'images médicales 3 MIP functionalities to come GridFtp upload Visualization: Management of a broader panel of Dicom standards Security: authentication by certificate + encryption + hydra Job submission functionality with automatic failed jobs resubmission Images & Jobs results research with an Amga search engine UI integration ? ?

Plateforme de Calcul pour les Sciences du Vivant Plateforme de stockage d'images médicales 4 Upload

Plateforme de Calcul pour les Sciences du Vivant Plateforme de stockage d'images médicales 5 Visualization

Plateforme de Calcul pour les Sciences du Vivant Plateforme de stockage d'images médicales 6 Anonymization & metadata extraction

Plateforme de Calcul pour les Sciences du Vivant Plateforme de stockage d'images médicales 7 Amga image registration (principle) Images selection Dicom fields selection Check in the image of the presence of the selected Dicom fields Amga connection Directory and attributes creation Dicom metadata extraction Check authorization + assignment of the rights is Dicom warning if Dicom selected fields missing if Amga server reachable ok Images registration

Plateforme de Calcul pour les Sciences du Vivant Plateforme de stockage d'images médicales 8 Amga registration (under development) Dicom fields selection Checking Dicom fields selected

Plateforme de Calcul pour les Sciences du Vivant Plateforme de stockage d'images médicales 9 Global architecture Imager PACS MIP SE PUSH image GridFTP LFC Hospital Doctor / Physician Copy image AMGA CE Grid Image registration Metadata registration Copy results Internet Image treatment job Requests on results Applet