Single nucleotide polymorphism-based molecular typing of M

Slides:



Advertisements
Similar presentations
Models for the organisation of hospital infection control and prevention programmes B. Gordts Clinical Microbiology and Infection Volume 11, Pages
Advertisements

A. Doménech-Sánchez, C. Juan, J.L. Pérez, C.I. Berrocal 
C.-S. Lee, J.-H. Lee  Clinical Microbiology and Infection 
P.-Y. Lévy  Clinical Microbiology and Infection 
Molecular evolution of Mycobacterium tuberculosis
Characteristics of Clostridium difficile strains isolated from asymptomatic individuals and from diarrheal patients  S. Wongwanich, P. Pongpech, C. Dhiraputra,
A. Doménech-Sánchez, C. Juan, J.L. Pérez, C.I. Berrocal 
Oral mucosa as a source of Mycobacterium leprae infection and transmission, and implications of bacterial DNA detection and the immunological status 
Rapid and sensitive diagnosis of Toxoplasma gondii infections by PCR
Quantitative detection of Toxoplasma gondii DNA in human body fluids by TaqMan polymerase chain reaction  O. Kupferschmidt, D. Krüger, T.K. Held, H. Ellerhrok,
Clearance of a fluconazole-resistant Candida albicans strain after switching antifungal therapy and initiation of triple therapy for HIV infection  M.
Detection of fungal DNA in lysis–centrifugation blood culture for the diagnosis of invasive candidiasis in neonatal patients  L. Trovato, P. Betta, M.G.
Activity of quinupristin–dalfopristin in invasive isolates of Streptococcus pneumoniae from Italy  A. Pantosti, F. D'Ambrosio, E. Bordi, A. Scotto d'Abusco,
M. Cogliati, R. D'Amicis, A.M. Tortorano 
Simultaneous single-tube PCR assay for the detection of Neisseria meningitidis, Haemophilus influenzae type b and Streptococcus pneumoniae  G. Tzanakaki,
E. Bronska, J. Kalmusova, O. Dzupova, V. Maresova, P. Kriz, J. Benes 
C.-S. Lee, J.-H. Lee  Clinical Microbiology and Infection 
A novel strategy based on genomics and specific PCR reveals how a multidrug-resistant Mycobacterium tuberculosis strain became prevalent in Equatorial.
Fast and low-cost decentralized surveillance of transmission of tuberculosis based on strain-specific PCRs tailored from whole genome sequencing data:
A comparison of three real-time PCR assays for the confirmation of Neisseria gonorrhoeae following detection of N. gonorrhoeae using Roche COBAS AMPLICOR 
Prevalence of diarrheagenic Escherichia coli strains detected by PCR in patients with travelers' diarrhea  M. Vargas, J. Gascón, F. Gallardo, M. T. Jimenez.
Rapid and accurate detection of rifampin and isoniazid-resistant Mycobacterium tuberculosis using an oligonucleotide array  W.-L. Huang, Z.-J. Hsu, T.C.
Evidence of transmission of verocytotoxin-producing Escherichia coli O111 from a cattle stable to a child  E. Møller Nielsen, C. Jensen, D. Lau Baggesen 
M. Montes, D. Vicente, O. Esnal, G. Cilla, E. Pérez-Trallero 
Whole genome analysis of Mycobacterium tuberculosis isolates from recurrent episodes of tuberculosis, Finland, 1995–2013  V. Korhonen, P.W. Smit, M. Haanperä,
R. Cantón  Clinical Microbiology and Infection 
A PCR-based method to differentiate between Acinetobacter baumannii and Acinetobacter genomic species 13TU  P.G. Higgins, H. Wisplinghoff, O. Krut, H.
Neonatal listeriosis in Algeria: the first two cases
Impact of transition from microscopy to molecular screening for detection of intestinal protozoa in Dutch patients  S. Svraka-Latifovic, S. Bouter, H.
E. Cambau, M. Drancourt  Clinical Microbiology and Infection 
PCR-RFLP detection and species identification of fungal pathogens in patients with febrile neutropenia  M. Dendis, R. Horváth, J. Michálek, F. Růžička,
E. Braun, K. Hussein, Y. Geffen, G. Rabino, Y. Bar-Lavie, M. Paul 
Determination of Cryptococcus neoformans var
Rhodococcus equi pneumonia in a heart transplant recipient in Korea, with emphasis on microbial diagnosis  S.J. Yoo, H. Sung, J.D. Chae, M. -N. Kim, C.H.
A nested polymerase chain reaction for detection of Legionella pneumophila in clinical specimens  Sverker Bernander, Hanna-Stina Hanson, Bo Johansson,
Isolation and characterisation of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland  D. Drudy, N. Harnedy, S. Fanning, R. O'Mahony,
Improved performance with saliva and urine as alternative DNA sources for malaria diagnosis by mitochondrial DNA-based PCR assays  C. Putaporntip, P.
Vector control: a cornerstone in the malaria elimination campaign
Visual detection of IS6110 of Mycobacterium tuberculosis in sputum samples using a test based on colloidal gold and latex beads  P. Upadhyay, M. Hanif,
A comparison of three real-time PCR assays for the confirmation of Neisseria gonorrhoeae following detection of N. gonorrhoeae using Roche COBAS AMPLICOR 
A new multiplex PCR for easy screening of methicillin-resistant Staphylococcus aureus SCCmec types I–V  K. Boye, M.D. Bartels, I.S. Andersen, J.A. Møller,
Mycobacterium leprae is identified in the oral mucosa from paucibacillary and multibacillary leprosy patients  M.A.M. Morgado de Abreu, A.M. Roselino,
Single nucleotide polymorphisms typing of Mycobacterium leprae reveals focal transmission of leprosy in high endemic regions of India  M. Lavania, R.S.
Cohort study of the seasonal effect on nasal carriage and the presence of Mycobacterium leprae in an endemic area in the general population  M. Lavania,
Prevalence of the sat, set and sen genes among diverse serotypes of Shigella flexneri strains isolated from patients with acute diarrhoea  S.K. Niyogi,
Polymerase-chain reaction/electrospray ionization-mass spectrometry for the detection of bacteria and fungi in bronchoalveolar lavage fluids: a prospective.
Clearance of a fluconazole-resistant Candida albicans strain after switching antifungal therapy and initiation of triple therapy for HIV infection  M.
Z. Wang, Z. Cui, Y. Li, T. Hou, X. Liu, Y. Xi, Y. Liu, H. Li, Q. He 
A. Szkaradkiewicz, I. Chudzicka-Strugała, T. M. Karpiński, O
Validation of an apicoplast genome target for the detection of Plasmodium species using polymerase chain reaction and loop mediated isothermal amplification 
Development and clinical validation of a molecular diagnostic assay to detect CTX-M- type β-lactamases in Enterobacteriaceae  J.D.D. Pitout, N. Hamilton,
Reena Ghildyal, Geoff Hogg, John Mills, Jayesh Meanger 
Prevalence of human papilloma virus type 5 DNA in lesional and non-lesional skin scales of Italian plaque-type psoriatic patients: association with disease.
Detection of nosocomial Clostridium difficile infections with toxigenic strains despite negative toxin A and B testing on stool samples  J. Stahlmann,
Effect of metronidazole versus standard care on length of stay of patients admitted with severe infectious mononucleosis: a randomized controlled trial 
Â. C. Volpini, M. J. Marques, S. Lopes dos Santos, G. L
C. Socolovschi, I. Bitam, D. Raoult, P. Parola 
Human isolates of Aeromonas possess Shiga toxin genes (stx1 and stx2) highly similar to the most virulent gene variants of Escherichia coli  A. Alperi,
S.B. Schwartz, K.A. Thurman, S.L. Mitchell, B.J. Wolff, J.M. Winchell 
A.P. Underwood, J. Green  Clinical Microbiology and Infection 
Use of short-term culture for identification of Mycobacterium avium subsp. paratuberculosis in tissue from Crohn's disease patients  D. Schwartz, I. Shafran,
H. Leblebicioglu, C. Eroglu  Clinical Microbiology and Infection 
S. Alexiou-Daniel, A. Stylianakis, A. Papoutsi, I. Zorbas, A. Papa, A
Pyrosequencing for rapid identification of carbapenem-hydrolysing OXA-type β- lactamases in Acinetobacter baumannii  T. Naas, L. Poirel, P. Nordmann  Clinical.
The first clinical isolate of Enterococcus faecium with the VanB phenotype in a teaching hospital in Greece  J. Papaparaskevas, J. Stefanou, A. Vatopoulos,
Three years experience of real-time PCR for the diagnosis of Q fever
Typing of Clostridium difficile
Impact of antibiotic restrictions: the patient's perspective
Combination of pulsed-field gel electrophoresis (PFGE) and single-enzyme amplified fragment length polymorphism (SAFLP) for differentiation of multiresistant.
The future of diagnostic bacteriology
Presentation transcript:

Single nucleotide polymorphism-based molecular typing of M Single nucleotide polymorphism-based molecular typing of M. leprae from multicase families of leprosy patients and their surroundings to understand the transmission of leprosy  R.P. Turankar, M. Lavania, V.S. Chaitanya, U. Sengupta, J. Darlong, F. Darlong, K.S.R. Siva Sai, R.S. Jadhav  Clinical Microbiology and Infection  Volume 20, Issue 3, Pages O142-O149 (March 2014) DOI: 10.1111/1469-0691.12365 Copyright © 2014 European Society of Clinical Infectious Diseases Terms and Conditions

Fig. 1 Detection of Mycobacterium leprae from environmental samples targeting the RLEP region. PCR amplification of the RLEP region of M. leprae obtained from the environmental samples from Purulia. PCR product was electrophoresed on a 2% agarose gel. Samples were: lane 1, negative control; lane 2, positive control; lane 3, 100 bp ladder, lanes 4–11, environmental samples. Clinical Microbiology and Infection 2014 20, O142-O149DOI: (10.1111/1469-0691.12365) Copyright © 2014 European Society of Clinical Infectious Diseases Terms and Conditions

Fig. 2 Polymerase chain reaction restriction fragment length polymorphism of locus-2. Product was electrophoresed on 4% agarose gel. Samples were: lanes 1, 3, 5, 7, unrestricted sample; restricted 2, 4, 6, 8 and lane 9, Thai strain unrestricted sample; lane 10 restricted, Thai strain. Clinical Microbiology and Infection 2014 20, O142-O149DOI: (10.1111/1469-0691.12365) Copyright © 2014 European Society of Clinical Infectious Diseases Terms and Conditions

Fig. 3 SNP subtype D from slit-skin smears. Clinical Microbiology and Infection 2014 20, O142-O149DOI: (10.1111/1469-0691.12365) Copyright © 2014 European Society of Clinical Infectious Diseases Terms and Conditions

Fig. 4 SNP subtype C from slit-skin smears. Clinical Microbiology and Infection 2014 20, O142-O149DOI: (10.1111/1469-0691.12365) Copyright © 2014 European Society of Clinical Infectious Diseases Terms and Conditions