Static Light Scattering From Concentrated Protein Solutions II: Experimental Test of Theory for Protein Mixtures and Weakly Self-Associating Proteins 

Slides:



Advertisements
Similar presentations
Binding Thermodynamics of Ferredoxin:NADP+ Reductase: Two Different Protein Substrates and One Energetics  Marta Martínez-Júlvez, Milagros Medina, Adrián.
Advertisements

Yinghao Wu, Barry Honig, Avinoam Ben-Shaul  Biophysical Journal 
Geometrical Properties of Gel and Fluid Clusters in DMPC/DSPC Bilayers: Monte Carlo Simulation Approach Using a Two-State Model  István P. Sugár, Ekaterina.
Bin Wu, Jeffrey A. Chao, Robert H. Singer  Biophysical Journal 
Kinetic Hysteresis in Collagen Folding
Role of Hydration Water in Protein Unfolding
Role of ATP-Hydrolysis in the Dynamics of a Single Actin Filament
Volume 102, Issue 8, Pages (April 2012)
Indrajeet Singh, Efrosyni Themistou, Lionel Porcar, Sriram Neelamegham 
Precision and Variability in Bacterial Temperature Sensing
Volume 103, Issue 9, Pages (November 2012)
Volume 102, Issue 2, Pages (January 2012)
Refolding of a High Molecular Weight Protein: Salt Effect on Collapse
Santosh K. Dasika, Kalyan C. Vinnakota, Daniel A. Beard 
Theory and Simulation of Water Permeation in Aquaporin-1
Partially Assembled Nucleosome Structures at Atomic Detail
Volume 96, Issue 5, Pages (March 2009)
Equation of State for Phospholipid Self-Assembly
Volume 104, Issue 1, Pages (January 2013)
A Consistent Experimental and Modeling Approach to Light-Scattering Studies of Protein-Protein Interactions in Solution  D. Asthagiri, A. Paliwal, D.
Volume 98, Issue 1, Pages (January 2010)
An Equilibrium Model for the Combined Effect of Macromolecular Crowding and Surface Adsorption on the Formation of Linear Protein Fibrils  Travis Hoppe,
Jai A. Pathak, Rumi R. Sologuren, Rojaramani Narwal 
Volume 86, Issue 4, Pages (April 2004)
Volume 109, Issue 8, Pages (October 2015)
Factor Xa Binding to Phosphatidylserine-Containing Membranes Produces an Inactive Membrane-Bound Dimer  Tilen Koklic, Rinku Majumder, Gabriel E. Weinreb,
Gustav Persson, Per Thyberg, Jerker Widengren  Biophysical Journal 
Volume 105, Issue 10, Pages (November 2013)
Ivan V. Polozov, Klaus Gawrisch  Biophysical Journal 
Volume 100, Issue 3, Pages (February 2011)
Random Hydrolysis Controls the Dynamic Instability of Microtubules
Volume 84, Issue 6, Pages (June 2003)
Protein Fibrillation Lag Times During Kinetic Inhibition
Paolo Mereghetti, Razif R. Gabdoulline, Rebecca C. Wade 
Lipid Headgroups Modulate Membrane Insertion of pHLIP Peptide
Volume 99, Issue 1, Pages (July 2010)
Volume 93, Issue 12, Pages (December 2007)
Kinetic Hysteresis in Collagen Folding
Troponin-Tropomyosin: An Allosteric Switch or a Steric Blocker?
Jason K. Cheung, Thomas M. Truskett  Biophysical Journal 
Carlos Mattea, Johan Qvist, Bertil Halle  Biophysical Journal 
Dmitrii V. Vavilin, Esa Tyystjärvi, Eva-Mari Aro  Biophysical Journal 
Thermodynamic Characterization of the Unfolding of the Prion Protein
Structural Flexibility of CaV1. 2 and CaV2
Volume 111, Issue 1, Pages (July 2016)
Dirk Gillespie, Le Xu, Gerhard Meissner  Biophysical Journal 
Pressure Dependence of the Photocycle Kinetics of Bacteriorhodopsin
A Mesoscale Model of DNA and Its Renaturation
Volume 83, Issue 6, Pages (December 2002)
Effects of Monovalent Anions of the Hofmeister Series on DPPC Lipid Bilayers Part II: Modeling the Perpendicular and Lateral Equation-of-State  E. Leontidis,
Protein Self-Association Induced by Macromolecular Crowding: A Quantitative Analysis by Magnetic Relaxation Dispersion  Karim Snoussi, Bertil Halle  Biophysical.
Fluorescence Fluctuation Spectroscopy of mCherry in Living Cells
Volume 109, Issue 10, Pages (November 2015)
Cyclic AMP Diffusion Coefficient in Frog Olfactory Cilia
Volume 93, Issue 10, Pages (November 2007)
Volume 103, Issue 2, Pages (July 2012)
Volume 108, Issue 9, Pages (May 2015)
Rogert Bauer, Rita Carrotta, Christian Rischel, Lars Øgendal 
Volume 113, Issue 12, Pages (December 2017)
Partially Assembled Nucleosome Structures at Atomic Detail
Vesna Serrano, Wenge Liu, Stefan Franzen  Biophysical Journal 
Dependence of Protein Folding Stability and Dynamics on the Density and Composition of Macromolecular Crowders  Jeetain Mittal, Robert B. Best  Biophysical.
The Dual-Color Photon Counting Histogram with Non-Ideal Photodetectors
Volume 109, Issue 8, Pages (October 2015)
Volume 105, Issue 9, Pages (November 2013)
Effect of Anions on the Binding and Oxidation of Divalent Manganese and Iron in Modified Bacterial Reaction Centers  Kai Tang, JoAnn C. Williams, James.
Kinetic Folding Mechanism of Erythropoietin
Paolo Mereghetti, Razif R. Gabdoulline, Rebecca C. Wade 
Volume 99, Issue 1, Pages (July 2010)
Volume 108, Issue 9, Pages (May 2015)
Presentation transcript:

Static Light Scattering From Concentrated Protein Solutions II: Experimental Test of Theory for Protein Mixtures and Weakly Self-Associating Proteins  Cristina Fernández, Allen P. Minton  Biophysical Journal  Volume 96, Issue 5, Pages 1992-1998 (March 2009) DOI: 10.1016/j.bpj.2008.11.054 Copyright © 2009 Biophysical Society Terms and Conditions

Figure 1 Dependence of normalized scattering intensity upon total molar concentration of BSA, ovalbumin, and binary mixtures. Experimental data: circles, squares, triangles, pentagrams and diamonds are results from solutions containing BSA mole fraction 1 (pure BSA), 0.8, 0.5, 0.2, and 0 (pure ovalbumin), respectively. Solid curves for the pure proteins were calculated using the effective hard sphere model for a single species with best-fit parameter values given in Table 1. Dashed curves for the mixtures were calculated using the effective hard sphere model for two species and mole fractions constrained to the values given above. Solid curves for the mixtures were calculated using the effective hard sphere model for two species with adjustable mole fraction of BSA using the following best fit values: 0.84, 0.55, and 0.24 respectively. Biophysical Journal 2009 96, 1992-1998DOI: (10.1016/j.bpj.2008.11.054) Copyright © 2009 Biophysical Society Terms and Conditions

Figure 2 Dependence of normalized scattering intensity upon total molar concentration of BSA, ovomucoid, and an equimolar mixture. Experimental data: circles, squares, and triangles, are results from solutions containing BSA mole fraction 1, 0.5, and 0, respectively. Solid curves for the pure proteins were calculated as described above. Dashed curve for the equimolar mixture was calculated using the effective hard sphere model for two species and BSA mole fraction constrained to 0.5. The solid curve for the equimolar mixture was calculated using the effective hard sphere model for two species with adjustable mole fraction of BSA using a best fit value of 0.58. Biophysical Journal 2009 96, 1992-1998DOI: (10.1016/j.bpj.2008.11.054) Copyright © 2009 Biophysical Society Terms and Conditions

Figure 3 Dependence of normalized scattering intensity upon total molar concentration of ovalbumin, ovomucoid, and an equimolar mixture. Experimental data: circles, squares, and triangles are results from solutions containing ovalbumin mole fraction 1, 0.5, and 0, respectively. Solid curves for the pure proteins were calculated as described above. The dashed curve for the equimolar mixture was calculated using the effective hard sphere model for two species and ovalbumin mole fraction constrained to 0.5. The solid curve for the equimolar mixture was calculated using the effective hard sphere model for two species with adjustable mole fraction of ovalbumin using a best fit value of 0.55. Biophysical Journal 2009 96, 1992-1998DOI: (10.1016/j.bpj.2008.11.054) Copyright © 2009 Biophysical Society Terms and Conditions

Figure 4 Concentration dependence of normalized scattering intensity of chymotrypsin A solutions at pH 4.1 (A), pH 5.4 (B), and pH 7.2 (C). Circles: Experimental data; thick solid curve: best fit of the three species effective hard sphere model with allowance for formation of equilibrium dimer and one higher oligomer, using the best-fit parameter values indicated in Table 2. Best fit curves calculated from the monomer-dimer-pentamer and monomer-dimer-hexamer models at pH 5.4 are indistinguishable. Also plotted in each panel are reference curves calculated according to the one-species effective hard sphere model for hypothetical nonassociating monomer (thin solid line), dimer (dashed), pentamer (dotted) and hexamer (dot-dashed). Biophysical Journal 2009 96, 1992-1998DOI: (10.1016/j.bpj.2008.11.054) Copyright © 2009 Biophysical Society Terms and Conditions

Figure 5 Fractional abundance of species plotted as a function of the logarithm of total protein concentration at pH 4.1 (A), 5.4 (B), and 7.2 (C), calculated as described in Minton et al (5) using the best-fit parameter values given in Table 2. Species abundance at pH 5.4 is calculated according to the best-fit monomer-dimer-hexamer model (solid curves) and the best-fit monomer-dimer-pentamer model (dashed curves). Biophysical Journal 2009 96, 1992-1998DOI: (10.1016/j.bpj.2008.11.054) Copyright © 2009 Biophysical Society Terms and Conditions

Figure 6 Comparison of values of the pH-dependent monomer-dimer equilibrium constant presented in Table 2 (+ symbols) with values previously reported for chymotrypsin A in the literature (all other symbols as indicated in the caption to Fig. 4B of reference 15). Biophysical Journal 2009 96, 1992-1998DOI: (10.1016/j.bpj.2008.11.054) Copyright © 2009 Biophysical Society Terms and Conditions