Hierarchical cluster analysis of reproducible parent masses (MS) representative of produced SMs from oral in vitro-grown biofilm representing >100 bacterial.

Slides:



Advertisements
Similar presentations
INDUCTION OF AGROBACTERIUM 2-3h ADDITION OF AS 200 M final AGROBACTERIUM GROWTH in MG/L (Tingay et al., 1997) CENTRIFUGATION RESUSPENSION IN INOCULATION.
Advertisements

Figure 1: (A) A microarray may contain thousands of ‘spots’. Each spot contains many copies of the same DNA sequence that uniquely represents a gene from.
GRAPHING RELATIONSHIPS For each graph, determine the graphing relationship and record it on a white board.
Supporting information Figures S1-S5. % Supplemental figure 1 Figure S1: Mycorrhizal colonization parameter et al 1996 Mycorrhizal colonization parameters.
Nonmetric multidimensional scaling (NMDS) ordination of variation in bacterial community structure of tree phyllosphere along a gradient of urban intensity.
مقالات إدارية حبيبات القهوة!!!! مبيعات قطاع الأعمال - الأحساء
GFP Chlorophyll Merged A B C D
Volume 33, Issue 2, Pages (January 2009)
Hierarchical cluster analysis and multidimensional scaling (MDS) analysis of replicate parent mass profiles of growth extracts from oral isolates and the.
H-NS2 protein interacts with Lon and H-NS protein in vitro.
Fig. 5. Correlation of tail and long bone growth velocities with Cxm serum concentrations in mice. Correlation of tail and long bone growth velocities.
The dicBF locus is conserved in E. coli species in different prophages
Loss of imprinting at the 14q32 domain is associated with microRNA overexpression in acute promyelocytic leukemia by Floriana Manodoro, Jacek Marzec, Tracy.
(A) Hierarchical clustering was performed to identify groups of patients with similar RNASeq expression of 20 genes associated with reduced survivability.
Volume 6, Issue 3, Pages (May 2013)
Blooms and effect sizes.
What Color is it?.
Characterized LuxR-associated and QS-regulated BGCs were identified in our screen. Characterized LuxR-associated and QS-regulated BGCs were identified.
Expression profiles of GAS virulence factors during planktonic and biofilm growth. Expression profiles of GAS virulence factors during planktonic and biofilm.
(a) Bifurcating tree generated from hierarchical clustering of OTUs based on mean pH. (a) Bifurcating tree generated from hierarchical clustering of OTUs.
Flowchart of approaches employed to putatively annotate PMSs secreted from oral bacteria. Flowchart of approaches employed to putatively annotate PMSs.
(A) Refined profile principal component analysis loading weights plot was used to derive insight into possible association of biomarkers. (A) Refined profile.
Plots of the number of sequences [log (x + 1) scale] from bacterial OTUs in both PCR replicates (PCR1 and PCR2) of the 348 wild rodents analyzed in the.
Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number. Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number.
Evaluation of re-annotation for non-melanogaster Drosophila species.
Low-temperature-associated proteomes.
Distribution of the bacterial taxa that exhibit the greatest log fold changes in mean relative abundance. Distribution of the bacterial taxa that exhibit.
Classification accuracy for each taxon at different ranks of the NCBI taxonomy. Classification accuracy for each taxon at different ranks of the NCBI taxonomy.
Phylogenetic tree of genome-sequenced bacterial strains from the Populus microbiome. Phylogenetic tree of genome-sequenced bacterial strains from the Populus.
H-NS2-FLAG expression is upregulated in DMEM and M9 minimal medium and when cells enter the stationary growth phase. H-NS2-FLAG expression is upregulated.
An RpaA-Dependent Sigma Factor Cascade Sets the Timing of Circadian Transcriptional Rhythms in Synechococcus elongatus  Kathleen E. Fleming, Erin K. O’Shea 
The Ribosome Emerges from a Black Box
Statistical comparison of metabolites and analysis of differential metabolites and key metabolic pathways. Statistical comparison of metabolites and analysis.
miRNA target pathways correlated with CRC-associated bacteria.
Bacteria significantly correlated with DE miRNAs.
Phenotype gain and loss dynamics match protein family dynamics.
Comparisons of MS/MS ion fragmentation spectra derived from GNPS network annotations (see Table S4 posted at ftp://massive.ucsd.edu/MSV /updates/ _aedlund_ /other/)
Outgrowth of passaged strains.
Figure 5 Pairwise correlations between selected patient-reported outcomes and performance tests in patients with MS (A) The number of pairwise correlations.
Reproducibility of DeathPro drug screens
Cross-validation (CV) results for Crohn’s disease study: most frequent taxa and most frequent balances selected in the CV procedure compared to the global.
(a, b) Hypothetical scenario where 2 samples of 2 proportions may explain two different scenarios in the environment. (a, b) Hypothetical scenario where.
Effects of single and combined stresses on plant development and productivity. Effects of single and combined stresses on plant development and productivity.
Acetylation is a dynamic modification in B. subtilis.
RNA-seq of the clk-1(qm30) (± nuclear or WT clk-1) mutants.
RNA abundance correlates with fitness.
Mitochondrial enzymatic activities and root tip respiration in wild type (WT) and mab1-1. Mitochondrial enzymatic activities and root tip respiration in.
Thermomorphogenesis in seedling organs is autonomous or interdependent
Benchmarks of OTU picking tools on artificial communities.
Comparison ofMyc-induced zebrafish liver tumors with different stages of human HCC and seven mouse HCC models. Comparison ofMyc-induced zebrafish liver.
Lab-Specific Gene Expression Signatures in Pluripotent Stem Cells
Global analysis of human, marmoset and mouse preimplantation stages.
(a) Molecular network clusters of pheophytin and procyanidin and their related metabolites. (a) Molecular network clusters of pheophytin and procyanidin.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
Repetition suppression: Interaction between trials without (prime) versus with (target) context (C) and repeated versus non-repeated context (i.e., repetition.
Principal-coordinate analysis (PCoA) (Hellinger distance metric) of plant community (A), soil chemistry (B), 16S rRNA gene (prokaryotic) (C), and ITS (fungal)
Spearman’s correlation analysis of microbiota and NMR spectra of the control and ciprofloxacin groups (A, C) or the vancomycin-imipenem group (B, D) after.
K-means clusters of T. elongatus and M
A, unsupervised hierarchical clustering of the expression of probe sets differentially expressed in the oral mucosa of smokers versus never smokers. A,
Correlation of miR-21 expression levels with DEGs in 28 bladder cancer cell lines. Correlation of miR-21 expression levels with DEGs in 28 bladder cancer.
Phylogenetic tree based on predominant 16S rRNA gene sequences obtained by C4–V8 Sutterella PCR from AUT-GI patients, Sutterella species isolates, and.
Genomic characterization of Bacillus cereus sensu lato group.
Untargeted LC/MS metabolite profiling of DFMO-treated HT-29 colorectal cancer cells. Untargeted LC/MS metabolite profiling of DFMO-treated HT-29 colorectal.
Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.
Relative proportions of taxa and UPGMA hierarchical clustering of the mock communities. Relative proportions of taxa and UPGMA hierarchical clustering.
Median unweighted UniFrac distances between three dolphin habitats: Shedd, MMP, and Sarasota. Median unweighted UniFrac distances between three dolphin.
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
ADAGE extracted features that represented sequence differences between strains. ADAGE extracted features that represented sequence differences between.
Live/Dead-stained fluorescence microscopy images of in vitro PEG tube surface biofilms grown in chemostats at pH 6.0 (A), pH 5.0 (B), pH 4.0 (C), and pH.
Identification of bacterial species producing the anti-Candida molecules. Identification of bacterial species producing the anti-Candida molecules. (A)
Presentation transcript:

Hierarchical cluster analysis of reproducible parent masses (MS) representative of produced SMs from oral in vitro-grown biofilm representing >100 bacterial species. Hierarchical cluster analysis of reproducible parent masses (MS) representative of produced SMs from oral in vitro-grown biofilm representing >100 bacterial species. MS profiles from replicate growth medium extracts were obtained from several growth stages: from 0 h (the time point when saliva was inoculated into SHI medium) to 21 h of incubation in SHI medium and sucrose. Pearson correlation distances are shown at tree branches. Distinct clusters of MS profiles are shown as colored leaves on the tree. Yellow leaves, 0 h of growth (0H) with saliva inoculated in SHI medium and sucrose; red leaves, 3 and 6 h of growth (3H and 6H, respectively); blue leaves, 9 and 13 h of growth (9H and 13H, respectively); black leaves, 17, 19, and 21 h of growth (17H, 19H, and 21H, respectively). Anna Edlund et al. mSystems 2017; doi:10.1128/mSystems.00058-17