Representative RAPD profiles from pools of H

Slides:



Advertisements
Similar presentations
Genomic walking (1) To start, you need: -the DNA sequence of a small region of the chromosome -An adaptor: a small piece of DNA, nucleotides long.
Advertisements

Probes can be designed in an evolutionary hierarchy.
content Analysis ofphcA between different pathogenicity of Ralstonia solanacearum Genetic diversity analysis of Ralstonia solanacearum based on BOX-PCR.
Analysis of Mitochondrial DNA from Chimpanzees in Tanzania Timothy Comar, April Bednarski, and Douglas Green.
Background Gregory Fischer Julie Anderson Daniel Herman  Department of Biology  University of Wisconsin-Eau Claire Heterologous expression of MBP1 from.
Laboratory investigation for clonality of a foodborne outbreak due to
Multi-drug carbapenem-resistant Klebsiella pneumoniae infection carrying the OXA-48 gene and showing variations in outer membrane protein 36 causing an.
Reads aligned into contigs
Department of Microbiology
(B.P :51) ( B:P52 ).
Rearrangements of Gene A and Gene B
Fig. 3. Antimicrobial activity is detected in diverse strains of CoNS and not predictable at the species level. Antimicrobial activity is detected in diverse.
Comparison of the banding patterns from randomly amplified polymorphic DNA PCR assays of sequential B pseudomallei isolates from each of the cases. Comparison.
Polycolonization of Helicobacter pylori among Chinese subjects
Genetic characterisation of Helicobacter pylori isolates from an Argentinean adult population based on cag pathogenicity island right-end motifs, lspA-glmM.
Distribution of rpoB mutations among multidrug-resistant Mycobacterium tuberculosis (MDRTB) strains from Thailand and development of a rapid method for.
Cluster diagram for four patient pairs with genotyped strains sharing the same sequence typing (ST). Cluster diagram for four patient pairs with genotyped.
Variable Number Tandem Repeats (VNTR)
Trans-Splicing to Spliceosomal U2 snRNA Suggests Disruption of Branch Site-U2 Pairing during Pre-mRNA Splicing  Duncan J. Smith, Charles C. Query, Maria.
Phylogenetic analysis of 3,582 HAV isolates in the VP1/P2B region (315-bp fragment). Phylogenetic analysis of 3,582 HAV isolates in the VP1/P2B region.
Patterns of replication within tissue cysts.
Itraconazole tissue and fluid concentrations in humans as multiples of the maximal or simultaneously measured concentration in plasma (μg/ml) after systemic.
An outbreak of skin and soft tissue infection caused by Mycobacterium abscessus following acupuncture  S.-J. Koh, T. Song, Y.A. Kang, J.W. Choi, K.J.
G. Kouppari, M. Biendo, G. Laurans, D. Thomas, O. Dechepy, F
Phylogenetic tree of 38 Pseudomonas type strains, based on the V3-V5 region sequence of the 16S rRNA gene (V3 primer, positions 442 to 492; and V5 primer,
S.B. Schwartz, K.A. Thurman, S.L. Mitchell, B.J. Wolff, J.M. Winchell 
Species diversity within the P. fluorescens species complex.
Amplified fragment length polymorphism genotyping of metronidazole-resistant Helicobacter pylori infecting dyspeptics in England  R.J. Owen, M. Ferrus,
Columbia blood agar plate showing an isogenic S
Comparison of one-tube multiplex PCR, automated ribotyping and intergenic spacer (ITS) sequencing for rapid identification of Acinetobacter baumannii 
Relative abundances of Propionibacterium species in different skin areas determined by 16S rRNA gene sequence analysis of 10 individuals. Relative abundances.
S. aureus recovered from the airways of a cystic fibrosis patient.
Glucose concentration-dependent increase of melanin synthesis.
PCR amplification of the ORF encoding the cytosolic p36 protein of M
Identification of the major molecular types within C. gattii.
High-resolution capillary gel electrophoresis of the B
Gonosomal Mosaicism for a Nonsense Mutation (R1947X) in the NF1 Gene in Segmental Neurofibromatosis Type 1  Claudia Consoli, Celia Moss, Stuart Green,
Examples of changes in colony morphology that can occur with hVISA and VISA strains. Examples of changes in colony morphology that can occur with hVISA.
Relationships between H. pylori, inflammation, and acid secretion.
Agarose gel electrophoresis illustrating randomly amplified polymorphic DNA (RAPD) fingerprints of the four reference strains and 12 tick isolates produced.
Sequence variation of 16S rRNA gene primer-binding sites.
Phylogenetic network with concatenated 16S rRNA, 23S rRNA, groEL, rpoB, and dnaK sequences (3,009 unambiguously aligned base pairs), including 71 Coxiella-like.
ITS rRNA gene locus. ITS rRNA gene locus. Schematic of the eukaryotic ribosomal gene cluster. The SILVA database contains sequences of the 18S gene, while.
Ribotyping methodology.
Agarose gel electrophoresis illustrating randomly amplified polymorphic DNA (RAPD) fingerprints of the four reference strains and 12 tick isolates produced.
Diagnostic tools for intestinal pathogenic E. coli.
Hector H. García et al. Clin. Microbiol. Rev. 2002; doi: /CMR
General schematic for MS analysis of ionized microbiological isolates and clinical material. General schematic for MS analysis of ionized microbiological.
Methylation status of IGFBPL1 in human breast cancer.
Agarose gel electrophoresis of ribosomal RNA gene polymerase chain reaction (PCR) products using Borrelia afzelii (top) and B burgdorferi sensu stricto.
Multiplex PCR assay to detect common resistance determinants in B
Roberta B. Carey et al. Clin. Microbiol. Rev. 2018; doi: /CMR
The future TB clinic. The future TB clinic. Sputum, saliva, and fecal samples are collected from patients for genome sequencing, SNP typing, or metagenomic.
The I1307K APC gene variant was identified using primers designed to detect the I1307K. The I1307K APC gene variant was identified using primers designed.
Construction of sgRNA expression cassette.
Phylogenetic trees for fusion (F) and attachment (G) genes of selected HMPV isolates. Phylogenetic trees for fusion (F) and attachment (G) genes of selected.
Phylogenetic tree of Shigella, EIEC, and nonpathogenic E
Phylogenetic tree of the complete genomes of 27 representative human (black) and camel (red) MERS-CoV strains rooted by NeoCoV (KC ). Phylogenetic.
Cytokine expression induced by ligated-intestinal-loop assay using RT-PCR. Cytokine expression induced by ligated-intestinal-loop assay using RT-PCR. PCR.
Relationship of partial rpoB gene sequences inferred by the neighbor-joining method for Canadian study strains of C. pyruviciproducens. Relationship of.
Distribution of the four major molecular types of C
Dendrogram relationships by 16S rRNA gene similarity of the A
DGGE analysis of tet(M) in water samples and in bacterial isolates.
Comparison of the van gene clusters.
Schematic representation of the relationships between acid resistance (urease activity and urea transport), nitrogen metabolism (ammonia production), metal.
Microarray transcriptional heat map analysis of cell wall stimulon activation of hVISA/VISA (defined by population analysis and vancomycin broth MIC) relative.
Differences in the relative abundances of mycobacteria (as determined via 16S rRNA gene sequencing) across households in the United States on municipal.
(A and B) Maximum-likelihood trees of 28 strains of Pantoea agglomerans and closely related species, constructed using concatenated sequences of six protein-coding.
Example of population analysis profile curves for vancomycin-susceptible and heterogeneous vancomycin-intermediate S. aureus strains. Example of population.
Amino acid substitutions in SHV ESBL derivatives.
Presentation transcript:

Representative RAPD profiles from pools of H Representative RAPD profiles from pools of H. pylori colonies (lanes P) and from individual single colonies (lanes 1 though 5) from child-mother pairs from individual households. Representative RAPD profiles from pools of H. pylori colonies (lanes P) and from individual single colonies (lanes 1 though 5) from child-mother pairs from individual households. The sequences of the four RAPD primers used (primers 1254, 1281, 1283, and 1290) are given in Materials and Methods. (A) Profiles in which predominant strains from the child and mother are closely matched (as was seen in about 30% of the cases) and also the profile of a rare instance in which the child seemed to carry more than one strain in abundance (compare the pooled and the multiple single colonies). The glr gene fragments from the isolates from child 1 and mother 1 (767 bp) were 100% identical. (B) Profiles showing that predominant strains from the child and the mother are unrelated (as was seen in about 70% of the cases) and also that just one strain is predominant in each person. The glr gene fragments (768 bp) from the isolates child 1 and mother 1 were 3.4% divergent (26 base substitution differences), as is typical of unrelated strains (see Fig. 2). Herrera P M et al. J. Clin. Microbiol. 2008;46:3912-3918