Map of the pSSE ATCC plasmid.

Slides:

Advertisements

Similar presentations

1 3. genome analysis. 2 The first DNA-based genome to be sequenced in its entirety was that of bacteriophage Φ-X174; (5,368 bp), sequenced by Frederick.

Advertisements

Figure S1_Yao Qin et al. Figure S1 Occurrence and distribution of trihelix family in different plant species. Red branches in the cladogram indicate that.

Brückner et al., Fig. 1b Brückner et al., Fig. 1B a c b 6 Fig. 1. Circular representation of Streptococcus pneumoniae genome comparisons.

Envelope generated by the interaction of the EODs of three weakly electric fish. Envelope generated by the interaction of the EODs of three weakly electric.

Interactions of movement and EODs for producing envelopes.

The first report of detecting the blaSIM-2 gene and determining the complete sequence of the SIM-encoding plasmid F. Sun, D. Zhou, Q. Wang, J. Feng,

Cladogram presenting a hierarchical overview of the MetaCyc pathways detected in the kefir microbiome with HUMAnN2. Cladogram presenting a hierarchical.

Representation of the evolutionary model.

Solution Structure of ZASP PDZ Domain

Masatoshi Yamazaki et al. JACEP 2015;1:

Global Mapping of Human RNA-RNA Interactions

Volume 21, Issue 3, Pages (October 2017)

Detection of lysine carbamylation and arginine citrullination in IgGH from bronchiectasis and rheumatoid arthritis patients. a) Schematic model of IgGH.

The first report of detecting the blaSIM-2 gene and determining the complete sequence of the SIM-encoding plasmid F. Sun, D. Zhou, Q. Wang, J. Feng,

Expression and occupancy of a set of transcription factors corresponding to the identified motifs at FAIRE peaks Expression and occupancy of a set of transcription.

What Color is it?.

Copy number estimation for Bacillus anthracis plasmids pXO1 and pXO2.

Genomic comparison of thermotolerance islands.

Volatile compounds detected in cheese by GC-MS and faceted heat map showing the variation of volatile compounds between the cheeses at days 0, 18, 24,

Plots of the number of sequences [log (x + 1) scale] from bacterial OTUs in both PCR replicates (PCR1 and PCR2) of the 348 wild rodents analyzed in the.

Venn diagram of blaKPC-containing plasmids detected in the environment and patients. Venn diagram of blaKPC-containing plasmids detected in the environment.

Yeast Origins Establish a Strand Bias for Replicational Mutagenesis

(a) Correspondence analysis of 88 soil samples.

Meta-analysis of the Listeriomics transcriptomic data sets.

Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number. Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number.

Simulated growth rates as a function of altered biomass compositions.

BLASTN comparison of the R478 and pSSE ATCC plasmids.

Parallel evolution of coding sequences above neutral expectation.

Comparison of the global transcriptomes of nine EPEC isolates.

Statistical comparison of metabolites and analysis of differential metabolites and key metabolic pathways. Statistical comparison of metabolites and analysis.

miRNA target pathways correlated with CRC-associated bacteria.

Bacteria significantly correlated with DE miRNAs.

Junjie Zhang et al. JACEP 2017;3:

Summary figure illustrating our hypotheses.

Human Promoters Are Intrinsically Directional

Comparison of gene expression maps from available S

Dynamic Regulation of Nucleosome Positioning in the Human Genome

Cross-validation (CV) results for Crohn’s disease study: most frequent taxa and most frequent balances selected in the CV procedure compared to the global.

Whole-genome comparison of E

A multitiered approach to characterize transcriptome structure.

(a, b) Hypothetical scenario where 2 samples of 2 proportions may explain two different scenarios in the environment. (a, b) Hypothetical scenario where.

Molecular network analysis of UPLC-Q-TOF MS2 data.

Divergent Transcription from Active Promoters

Identification of the GCS1 ortholog in Gonium pectorale.

Tagging of the endogenous Py03652 gene with the gfp gene in Plasmodium yoelii. Tagging of the endogenous Py03652 gene with the gfp gene in Plasmodium yoelii.

Activity flow of PDGFR signaling pathways.

A–F, Schematic drawings illustrating subarachnoid hemosiderosis and superficial cortical hemosiderosis. A–F, Schematic drawings illustrating subarachnoid.

Barc knockdown causes intron retention of short, GC-rich introns with weak splice sites. barc knockdown causes intron retention of short, GC-rich introns.

Distribution of ARGs in RefSoil genomes and plasmids.

Fig. 7 LSH database and similarity search example.

Relative growth of transcription factor knockout mutants on different sulfur sources. Relative growth of transcription factor knockout mutants on different.

The occurrence of D calls on a dive profile.

LC8 is structurally variable but conserved in sequence.

Editing and reconstitution of CPAR2_

Motif sequence logo and surface analysis of LC8.

Repetition suppression: Interaction between trials without (prime) versus with (target) context (C) and repeated versus non-repeated context (i.e., repetition.

Dynamics of Prochlorococcus transcriptome changes during the transition from the expected dark period into extended darkness. Dynamics of Prochlorococcus.

Template application to detect KC-like activity.

P-network of 2,616 prokaryote genomes based on chromosomal sequences with rRNA genes removed. P-network of 2,616 prokaryote genomes based on chromosomal.

PCoA plots of subgingival samples with disease classification overlaid

Mutational landscape in lamin heart disease.

Dynamic contrast-enhancement curves for patients with SLE (blue) and healthy controls (red) according to the brain regions sampled. Dynamic contrast-enhancement.

Expression of XCR1 in normal ovarian surface epithelium and the IOSE and borderline EOC cell lines. Expression of XCR1 in normal ovarian surface epithelium.

Genomic characterization of Bacillus cereus sensu lato group.

Long noncoding RNAs are distributed throughout the genome and are characteristically distinct from annotated mRNAs. Long noncoding RNAs are distributed.

A and B, two blocks from the original specimen used for TMA demonstrated areas with varying patterns of ALK rearrangement and KRAS mutation status. A and.

Fig. 4 Genomic and transcriptomic analysis of T

Fig. 2 Comparison of the observed DRs and the estimates by the VR model and FL. Comparison of the observed DRs and the estimates by the VR model and FL.

AtSPO11-1–Dependent sRNAs Show Enrichment at Meiotic CO-Associated DNA Motifs. AtSPO11-1–Dependent sRNAs Show Enrichment at Meiotic CO-Associated DNA Motifs.

Presentation transcript:

Map of the pSSE ATCC-43845 plasmid. Map of the pSSE ATCC-43845 plasmid. The thermotolerance islands are indicated as orange regions on the map and demonstrate increased high GC content (black track). pSSE ATCC-43845 shares high homology with the backbone of the R478 plasmid (red tBLASTx). Base modification signals generated by BaseModFunctions v2.1.R and Circos are overlaid on the plasmid map. Qmod values are height proportional to the interpulse distance ratio for each of the modified bases on the positive strand (red outermost track) and negative strand (red innermost track). Blue hash marks correspond to the CGCAN8TCNG motifs present on the plasmid. Scott V. Nguyen et al. mSystems 2017; doi:10.1128/mSystems.00190-16