Transcription levels of metabolic pathways and genes in mother and infant pair 4 at time point 2. Transcription levels of metabolic pathways and genes.

Slides:



Advertisements
Similar presentations
Cladogram presenting a hierarchical overview of the MetaCyc pathways detected in the kefir microbiome with HUMAnN2. Cladogram presenting a hierarchical.
Advertisements

Boxplots displaying relative percent abundance of consistent abundance-based microbiome members present in the tissue, mucus, and holobiont (Holo) fractions.
Correlation between the ability of Novosphingobium strains from four different habitats to degrade aromatic and xenobiotic compounds. Correlation between.
Intervention effects on taxonomic and functional pathway diversity of the intestinal microbiome. Intervention effects on taxonomic and functional pathway.
Predicted location and functional classification of differentially expressed transcripts. Predicted location and functional classification of differentially.
(a) PCoA of the abundance of unique OTUs per sample from the 16S marker gene sequencing data from the AGP data repository (small spheres) and the San Diego.
Metabolic pathway changes of intracellular M. tuberculosis.
1H NMR-based fecal metabolomics assessment of gut microbial functional activity in response to monkey milk, standard infant formula, or B. lactis-supplemented.
Succession of the butyrate-producing community after birth.
Strain-level phylogenetic trees for microbes present in both the mother and infant. Strain-level phylogenetic trees for microbes present in both the mother.
Meta-analysis of the Listeriomics transcriptomic data sets.
Bacteroidetes bacteria are the main contributors to LPS biosynthesis in the human gut microbiome. Bacteroidetes bacteria are the main contributors to LPS.
Correlation of mouse gene expression with bacterial gene expression.
Systematic analysis of host-pathogen interactions.
Presence of motifs correlated with decreased expression of downstream genes. Presence of motifs correlated with decreased expression of downstream genes.
Genes affected concordantly within the ileum and meta-analysis data sets formed biofunctional clusters of overlapping pathways. Genes affected concordantly.
Pairwise analysis of detected virus taxonomy prior to and following intervention. Pairwise analysis of detected virus taxonomy prior to and following intervention.
Altered pathways in prostate cancer.
Functional prediction of unknown proteins in S. pneumoniae.
Comparison of the original ITS primer pair and the new, modified ITS primer pair. Comparison of the original ITS primer pair and the new, modified ITS.
Comparison of the modified 515f/806rB V4 primer pair and the 515f (modified)/926r primer pair. Comparison of the modified 515f/806rB V4 primer pair and.
Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.
Example of amplicon performance in our presented workflow.
PICRUSt analysis results of predicted functional pathways in the gut microbiota. PICRUSt analysis results of predicted functional pathways in the gut microbiota.
Pathway analysis of genes upregulated after RSV infection.
(a, b) Hypothetical scenario where 2 samples of 2 proportions may explain two different scenarios in the environment. (a, b) Hypothetical scenario where.
Metabolite predictability across metabolic categories (A) and disease states (B) in the vaginal microbiome. Metabolite predictability across metabolic.
Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.
Transcription of cellulolytic genes disaggregated by genome.
Framework for integrating taxonomic and metabolomic data.
Enrichment of microbial functions with elevated triclosan.
MAGs and testes transcript expression levels in the An. gambiae complex. MAGs and testes transcript expression levels in the An. gambiae complex. (A) Percentage.
RNA abundance correlates with fitness.
Functional potential analyses.
Microbial composition of mother and infant samples and shared bacteria within mother-infant pairs. Microbial composition of mother and infant samples and.
Gain of function in the gut microbiome as a consequence of AXOS ingestion. Gain of function in the gut microbiome as a consequence of AXOS ingestion. Overrepresented.
Linear schematic of the basic quality control procedure for marker gene (microbiome) data. Linear schematic of the basic quality control procedure for.
Putative sources of interphylum horizontal gene transfer in the M
Transcriptional profiling of selected genes by RT-PCR.
(A) Amphibian SourceTracker analysis reveals that water is the only sample type that obtains a notable amount of its microbial community from amphibian.
Initial analysis of the transcriptional effects in eight carbon storage mutants (1 to 8; ΔphbA, phbB::ΩSpSm, ΔphbAB, ΔphbC, ΔphaZ, ΔbdhA, acsA2::Tn5, glgA1ΔPstI)
Heatmaps reveal significantly affected pathways by 4 mg/liter polymyxin B (PMB) in strains PAK and PAKpmrB6 at 1 h using transcriptomics. Heatmaps reveal.
Stage-specific expression modules of preimplantation development.
Comparison of species and function profiles with ultradeep sequencing data. Comparison of species and function profiles with ultradeep sequencing data.
Differences in Verrucomicrobia genera across plant community types.
Year 10, Pathway C 2012 New Generations.
Miniaturized amplicon library preparation reaction reduces costs while maintaining microbiome readout integrity. Miniaturized amplicon library preparation.
Sequence variation of 16S rRNA gene primer-binding sites.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
Gut Microbiome Studies
Correlation of alpha diversity with (left panel) postmenstrual age (Shannon: multiple R2 value, ; P value, 1.507e−06), (middle panel) total growth.
Most mutations were nonsynonymous, especially at the nodes of new clades, with affected genes encoding regulatory functions, lipid metabolism, and envelope.
Expression of selected genes in the ΔSMcomS strain in response to increasing concentrations of XIP. RT-PCR analysis of gene expression was performed in.
Comparison of the original 515f/806r primer pair and the new, modified 515f/806rB primer pair. Comparison of the original 515f/806r primer pair and the.
Expression of selected intergenic regions in response to increasing concentrations of XIP. qRT-PCR analysis of gene expression was performed with strain.
Enrichment of KEGG pathways in microbial genes in different samples.
Comparison of gut microbiota alpha diversity in different preservatives based on 16S rRNA gene V3-V4 amplicon sequencing. Comparison of gut microbiota.
Venn diagram of core gene overlap of the Tannerella species.
KEGG categories of host DEGs (up- and downregulated genes) enriched at selected points after φAbp1 infection. KEGG categories of host DEGs (up- and downregulated.
PCoA plots of subgingival samples with disease classification overlaid
The log-transformed reporter Z scores of the metabolic pathways showing significant differences between the PCOS and control groups. The log-transformed.
Comparison between early-life and year 2 AMR levels.
Normalized abundance of tetracycline resistance genes in Swedish infants by AMR++. Normalized abundance of tetracycline resistance genes in Swedish infants.
Relationships between biocide concentrations and microbial species.
Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.
Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.
Dynamic Bayesian inference network.
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
Relative abundance and expression of the 10 most abundant MAGs in the bioreactor at day 96. Relative abundance and expression of the 10 most abundant MAGs.
Infant skin and oral mycobiomes by birth mode.
Presentation transcript:

Transcription levels of metabolic pathways and genes in mother and infant pair 4 at time point 2. Transcription levels of metabolic pathways and genes in mother and infant pair 4 at time point 2. (A) Scatterplots showing the transcription rates of metabolic pathways of shared and nonshared species and genera of interest for both the mother and infant of pair 4 at time point 2. (B) Comparison between transcription rates of gene families in mother and infant gut microbiomes. Francesco Asnicar et al. mSystems 2017; doi:10.1128/mSystems.00164-16