S. Moore, N. Thomson, A. Mutreja, R. Piarroux

Slides:

Advertisements

Similar presentations

Models for the organisation of hospital infection control and prevention programmes B. Gordts Clinical Microbiology and Infection Volume 11, Pages

Advertisements

Molecular characterization of dengue virus 1 from autochthonous dengue fever cases in Croatia I.C. Kurolt, L. Betica-Radić, O. Daković-Rode, L. Franco,

Sequence and structure relatedness of matrix protein of human respiratory syncytial virus with matrix proteins of other negative-sense RNA viruses K.

ST2249-MRSA-III: a second major recombinant methicillin-resistant Staphylococcus aureus clone causing healthcare infection in the 1970s G.R. Nimmo, J.A.

C.-S. Lee, J.-H. Lee Clinical Microbiology and Infection

The greatest steps towards the discovery of Vibrio cholerae

A.R. Manges Clinical Microbiology and Infection

Gut bacterial microbiota and obesity

Migrant health—a cause for concern?

Nepalese origin of cholera epidemic in Haiti

C.-S. Lee, J.-H. Lee Clinical Microbiology and Infection

A.K. Reddy, P. Garg, I. Kaur Clinical Microbiology and Infection

Genotypic analysis of genes associated with transmission and drug resistance in the Beijing lineage of Mycobacterium tuberculosis J-R. Chang, C-H. Lin,

Pan-genome multilocus sequence typing and outbreak-specific reference-based single nucleotide polymorphism analysis to resolve two concurrent Staphylococcus.

Whole genome analysis of Mycobacterium tuberculosis isolates from recurrent episodes of tuberculosis, Finland, 1995–2013 V. Korhonen, P.W. Smit, M. Haanperä,

R. Cantón Clinical Microbiology and Infection

Two listeria outbreaks caused by smoked fish consumption—using whole-genome sequencing for outbreak investigations S. Gillesberg Lassen, S. Ethelberg,

Genome-based insights into the evolution of enterococci

The importance of enterovirus surveillance in a Post-polio world

Surveillance of Legionnaires’ disease in Austria

Tracking human migration patterns through the oral bacterial flora

Genome sequencing and characterization of an extensively drug-resistant sequence type 111 serotype O12 hospital outbreak strain of Pseudomonas aeruginosa

Vector control: a cornerstone in the malaria elimination campaign

A. Papa, K. Dumaidi, F. Franzidou, A. Antoniadis

F. Aujoulat, H. Marchandin, I. Zorgniotti, A. Masnou, E. Jumas-Bilak

Genome-wide single nucleotide polymorphism-based assay for high-resolution epidemiological analysis of the methicillin-resistant Staphylococcus aureus.

B. Gordts Clinical Microbiology and Infection

Hepatitis C virus and interferon type III (interferon-λ3/interleukin-28B and interferon-λ4): genetic basis of susceptibility to infection and response.

Occupational transmission of hepatitis C virus resulting from use of the same supermarket meat slicer L. Bocket, S. Chevaliez, N. Talbodec, A. Sobaszek,

F. Magurano Clinical Microbiology and Infection

Multiple genotypes and subtypes of hepatitis B and C viruses in Belarus: similarities with Russia and western European influences C.M. Olinger, N.V.

V Duque, ÁA. Holguín, M. Silvestre, J. GonzÁAlez-Lahoz, V. Soriano

A novel phlebovirus in Albanian sandflies

Evidence of horizontal gene transfer between amoeba and bacteria

A. Papa, K. Xanthopoulou, S. Gewehr, S. Mourelatos

W. Saisongkorh, L. Barrassi, B. Davoust, C. -A. de Broucker, D

Metagenomics and probiotics

Whole genome-based phylogenetic analysis of Rickettsiae

Sequence and structure relatedness of matrix protein of human respiratory syncytial virus with matrix proteins of other negative-sense RNA viruses K.

Hepatitis B virus in Buenos Aires, Argentina: genotypes, virological characteristics and clinical outcomes S.C. Pezzano, C. Torres, H.A. Fainboim, M.B.

The mosaic genome structure and phylogeny of Shiga toxin-producing Escherichia coli O104:H4 is driven by short-term adaptation K. Zhou, M. Ferdous, R.F.

Molecular characterization of dengue virus 1 from autochthonous dengue fever cases in Croatia I.C. Kurolt, L. Betica-Radić, O. Daković-Rode, L. Franco,

Whole-genome sequencing of Campylobacter jejuni isolated from Danish routine human stool samples reveals surprising degree of clustering K.G. Joensen,

MW polyomavirus and STL polyomavirus present in tonsillar tissues from children with chronic tonsillar disease J. Peng, K. Li, C. Zhang, Q. Jin Clinical.

ST2249-MRSA-III: a second major recombinant methicillin-resistant Staphylococcus aureus clone causing healthcare infection in the 1970s G.R. Nimmo, J.A.

Pandemic lineages of extraintestinal pathogenic Escherichia coli

Genetic diversity of Mycobacterium tuberculosis isolates from foreign-born and Japan- born residents in Tokyo M. Kato-Miyazawa, T. Miyoshi-Akiyama, Y.

HBV subgenotype misclassification expands quasi-subgenotype A3

Emergence of Crimean–Congo haemorrhagic fever in Greece

Detection of the NS3 Q80K polymorphism by Sanger and deep sequencing in hepatitis C virus genotype 1a strains in the UK A. Beloukas, S. King, K. Childs,

A. McNally, F. Alhashash, M. Collins, A. Alqasim, K. Paszckiewicz, V

Twelve years of fluconazole in clinical practice: global trends in species distribution and fluconazole susceptibility of bloodstream isolates of Candida

Genetic diversity of Legionella pneumophila inferred from rpoB and dotA sequences K.S. Ko, H. Miyamoto, H.K. Lee, M.-Y. Park, K. Fukuda, B.J. Park, Y.-H.

Circulation of international clones of levofloxacin non-susceptible Streptococcus pneumoniae in Taiwan Y.-C. Hsieh, L.-Y. Chang, Y.-C. Huang, H.-C. Lin,

H.D. Donoghue Clinical Microbiology and Infection

Presence of sandflies infected with Leishmania infantum and Massilia virus in the Marseille urban area† B. Faucher, R. Piarroux, C. Mary Clinical Microbiology.

Influenza A(H1N1)2009 in the French Pacific territories: assessment of the epidemic wave during the austral winter Epidemiological Task Group for Overseas.

N. Santos, G. S. Mendes, R. C. Silva, G. A. Pena, M. Rojas, A. R

Human metapneumovirus-associated respiratory tract infections in the Republic of Ireland during the influenza season of 2003–2004 M.J. Carr, G.P. McCormack,

Real-time comparative monitoring of the A/H1N1 pandemic in France

Molecular epidemiology and genetic diversity of human astrovirus in South Korea from 2002 to 2007 A.Y. Jeong, H.S. Jeong, M.Y. Jo, S.Y. Jung, M.S. Lee,

Modelling during an emergency: the 2009 H1N1 influenza pandemic

T. A. Nguyen, L. P. Hoang, L. D. Pham, K. T. Hoang, S. Okitsu, M

Bloodstream infections due to Peptoniphilus spp.: report of 15 cases

J.L. Balcázar Clinical Microbiology and Infection

G.C. Schito Clinical Microbiology and Infection

Sandfly fever virus outbreak in Cyprus

Impact of antibiotic restrictions: the patient's perspective

Novel West Nile virus lineage 1a full genome sequences from human cases of infection in north-eastern Italy, 2011 L. Barzon Clinical Microbiology and.

The future of diagnostic bacteriology

Presentation transcript:

Widespread epidemic cholera caused by a restricted subset of Vibrio cholerae clones S. Moore, N. Thomson, A. Mutreja, R. Piarroux Clinical Microbiology and Infection Volume 20, Issue 5, Pages 373-379 (May 2014) DOI: 10.1111/1469-0691.12610 Copyright © 2014 European Society of Clinical Infectious Diseases Terms and Conditions

FIG. 1 A maximum-likelihood phylogenetic tree of the Vibrio cholerae seventh pandemic lineage based on whole core genome single-nucleotide polymorphism (SNP) variations. The pre-seventh pandemic phylogeny-based core genome SNP analysis of 123 seventh pandemic V. cholerae strains, excluding probable recombination events, is shown. The pre-seventh pandemic strain M66 served as an outgroup to root the tree. The branch colours correspond to the indicated region of strain isolation. The branches representing the three major waves are indicated. The wave I branch responsible for the 1990s South American epidemic is enlarged in the circle, and the related Angolan isolate is indicated. A case of sporadic intercontinental transmission in wave I is also designated. The Haitian strain is indicated in red. The dates shown are the median estimates for the indicated nodes, derived from the results of the BEAST analysis. Clinical Microbiology and Infection 2014 20, 373-379DOI: (10.1111/1469-0691.12610) Copyright © 2014 European Society of Clinical Infectious Diseases Terms and Conditions