Low-temperature-associated proteomes.

Slides:



Advertisements
Similar presentations
Computational studies of intramolecular disulfide bonded catenanes as a novel stabilizing mechanism in thermophilic microbes August 23, 2007 Daniel Park.
Advertisements

Cellular macromolecule catabolism cellular macromolecule metabolism cytoplasm organization and biogenesis establishment of cellular localization intracellular.
Cytoskeleton Ribosome Protein folding mRNA processing Lipid transport Transcription Cell growth Cytoskeleton Carbohydrate metabolism Protein catabolism.
Glutamyl-tRNA 5-Aminolevulinic acid Protoporphyrinogen IX Mg-Proto IX Heme Mg-Proto IX ME HEMA GSA PPO FC PORB CHLD, CHLH, CHLI Glutamate 1-semialdehyde.
First selection: transformation Plating on plate with Km Cultivation in liquid medium with Km until the cells reach the stationary phase Second selection:
Cell lineXY11q WM WM793-P WM793-P Lu ABAB WM793:WM793-P2WM793:1205-Lu WM793 WM793:WM793-P1 Supplemental.
Diffusion The movement of particles across the cell membrane from an area of high concentration to low concentration Type of passive transport (does not.
Protein. Protein and Roles 1: biological process unknown 1.1 Structural categories 1.2 organism categories 1.3 cellular component o unlocalized.
Conditions for Cell Culture
Figure S2 A B Log2 Fold Change (+/- cAMP) Transcriptome (9hr)
Cladogram presenting a hierarchical overview of the MetaCyc pathways detected in the kefir microbiome with HUMAnN2. Cladogram presenting a hierarchical.
Chemical Compounds in Cells
The Mimivirus Giant double stranded DNA virus Discovered in amoebas
Melting behavior of proteins identified in the Escherichia coli meltome and their properties Melting behavior of proteins identified in the Escherichia.
Proteins!!! More than just meat.
binding sites 58 of the 473 unambiguously assigned phosphorylation sites are predicted by Scansite to be sites for binding. 50 of these correspond.
NSAF and GeneChip data have similar distribution properties.
NSAF and GeneChip datasets have similar PLGEM parameters.
PLGEM fits equally well on NSAF and GeneChip datasets
Distribution of disorder in the cytosolic phosphoproteome
Identification of differentially abundant proteins in the yeast growth phase NSAF dataset. Identification of differentially abundant proteins in the yeast.
NSAF and GeneChip datasets have a similar variance-versus-mean dependence.A–C, the rowMean and the rowS.D. of the abundance values for each transcript.
Cold Adaption in Budding Yeast
Characteristics and Classification of Life
Transcriptional response to mating in whole A. gambiae females.
A Wiring of the Human Nucleolus
Condensed metabolic map of M
Chloroplast An organelles that specializes in photosynthesis in plants and many protists. Plant chloroplast have two outer membranes , and are filled.
Percentage of proteins identified in envelope membrane extracts according to the purification method and the number of transmembrane domains. Percentage.
Construction and analysis of the HEV-host PPI network.
Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes  Eva C.M. Nowack, Michael Melkonian, Gernot Glöckner 
Biphasic metabolism of Protochlamydia during development in Acanthamoeba castellanii. Biphasic metabolism of Protochlamydia during development in Acanthamoeba.
Plasma CEP adducts and autoantibodies by donor age.
Expression profiles of GAS virulence factors during planktonic and biofilm growth. Expression profiles of GAS virulence factors during planktonic and biofilm.
Metabolic pathway changes of intracellular M. tuberculosis.
Schematic of cellular role categories of theoretical (open bars) and identified proteins on a 2-D electrophoresis gel, pH 4–7 (black bars), in L. casei.
Simulated growth rates as a function of altered biomass compositions.
Increased cell numbers of L. delbrueckii subsp. bulgaricus LBB
Epitope Mapping Performance using a single peptide microarray.
miRNA target pathways correlated with CRC-associated bacteria.
Correction of translational start site by identification of N-terminal peptide. Correction of translational start site by identification of N-terminal.
Characterization of differentially expressed proteins based on their COG classification. Characterization of differentially expressed proteins based on.
N-terminal extension of a gene using peptides mapping upstream to an annotated start site. N-terminal extension of a gene using peptides mapping upstream.
Protein microarrays for validation of antibodies.
Altered pathways in prostate cancer.
Functional prediction of unknown proteins in S. pneumoniae.
K-Means clustering of protein and mRNA expression patterns after PPAR agonists treatments. k-Means clustering of protein and mRNA expression patterns after.
Pangenomes and core genomes of 13 M. florum strains.
PICRUSt analysis results of predicted functional pathways in the gut microbiota. PICRUSt analysis results of predicted functional pathways in the gut microbiota.
Changes in mRNA levels do not correlate with changes in protein levels in upf1Δ and xrn1Δ cells. Changes in mRNA levels do not correlate with changes in.
Comparison of proteomics and RNA‐Seq data.
Energetics of Pore Opening in a Voltage-Gated K+ Channel
Log- to stationary-phase growth results in differential acetyl abundance on specific proteins. Log- to stationary-phase growth results in differential.
Correlations between metabolic pathway abundances and environmental conditions deduced from the ocean samples in this study, at various levels of model.
Proteins – complex, shape specific, huge variety
DNA Replication vs. Protein Synthesis
Molecular Biology Vocabulary.
The sum of proteins that can be synthesized by an organism
Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.
Aim: Organic Compounds # 2 - Proteins
Differential protein, mRNA, lncRNA and miRNA regulation by p53.
Characterization of differentially expressed genes based on their COG classification. Characterization of differentially expressed genes based on their.
Fig. 4. The model of malate metabolism in fruit cells under different K level conditions. The model of malate metabolism in fruit cells under different.
GATC sites where methylation changes over time correspond to a change in gene expression in a dam mutant. GATC sites where methylation changes over time.
The correlation network constructed using the identified metagenomic species (MGS), metabolic parameters (including TGs, TC, and FPG), SCFAs (including.
Most mutations were nonsynonymous, especially at the nodes of new clades, with affected genes encoding regulatory functions, lipid metabolism, and envelope.
KEGG categories of host DEGs (up- and downregulated genes) enriched at selected points after φAbp1 infection. KEGG categories of host DEGs (up- and downregulated.
P-network of 2,616 prokaryote genomes based on chromosomal sequences with rRNA genes removed. P-network of 2,616 prokaryote genomes based on chromosomal.
Overview of the metabolism of S. aciditrophicus.
Milk-associated proteomes.
Presentation transcript:

Low-temperature-associated proteomes. Low-temperature-associated proteomes. Proteins with P values of less than 0.1 and over 1.5-fold differences between the two conditions are shown. Node size negatively reflects the P value of the corresponding protein, and the edge width positively correlates to the protein NSAF value under each condition. Shared proteins produced in larger quantities in milk at 4°C incubation (versus milk at 37°C incubation) and MRS at 37°C incubation (versus milk at 37°C incubation) are colored in red. Each node color indicates a COG category. The functional categories are abbreviated as follows: C, energy production and conversion; D, cell cycle control and mitosis; E, amino acid metabolism and transport; G, carbohydrate metabolism and transport; L, replication, recombination, and repair; K, transcription; N, cell motility; M, cell wall structure and biogenesis and outer membrane; O, molecular chaperones and related functions; P, inorganic ion transport and metabolism; R, general function predicted only; S, no functional prediction. Xiaochen Yin et al. mSystems 2017; doi:10.1128/mSystems.00027-17