Distribution of the bacterial taxa that exhibit the greatest log fold changes in mean relative abundance. Distribution of the bacterial taxa that exhibit.

Slides:



Advertisements
Similar presentations
Figure S1 The North Sea beach of the Dutch barrier island of Schiermonnikoog (N53°30’ E6°10’). The transect indicates the chronosequence along the developing.
Advertisements

Clonal bias of CD56−CD16+ NK cell subpopulations.
Taxonomic composition of subway microbial communities.
Exploration of the data set with age as a continuous variable.
Microbial community dissimilarity.
Volume 138, Issue 4, Pages (August 2009)
Fig. 4 Bacterial taxonomic groups that discriminate among RYGB-, SHAM-, and WMS-derived samples. Bacterial taxonomic groups that discriminate among RYGB-,
Relative abundances of the top 10 most abundant OTUs across all fish samples are shown along with the data from the probiotic B. pumilus RI06-95 (OTU 3673)
Benchmarks of OTU picking tools on natural communities.
Dysbiosis of gut microbiota patterns in Chinese patients with IBD
Microbial flora of giant pandas.
Heat map displaying the abundances of bacterial families identified on plastics particles collected from the North Atlantic Subtropical Gyre (NASG, samples.
Bacterial biomarkers associated with disease severity.
Differential abundance of bacterial families.
Microbial diversity of the 10 body locations sampled.
(a) Bifurcating tree generated from hierarchical clustering of OTUs based on mean pH. (a) Bifurcating tree generated from hierarchical clustering of OTUs.
Fluoride affects stool-derived taxa found in the oral cavity.
Volume 10, Issue 11, Pages (March 2015)
Plots of the number of sequences [log (x + 1) scale] from bacterial OTUs in both PCR replicates (PCR1 and PCR2) of the 348 wild rodents analyzed in the.
A small number of bacteria showed high levels of growth in the storage studies. A small number of bacteria showed high levels of growth in the storage.
Taxonomic composition of the baboon and human gut microbiota.
(a) Correspondence analysis of 88 soil samples.
Bacteroidetes bacteria are the main contributors to LPS biosynthesis in the human gut microbiome. Bacteroidetes bacteria are the main contributors to LPS.
(A) Heat maps illustrate the percent abundances of the most abundant genera (all OTUs taxonomically classified to the same genus were collapsed into a.
Differences in microbiome between control and BPA-exposed rabbit offspring and dams according to linear discriminant analysis effect size (LEfSe). Differences.
Performance of FDR methods on filtered microbiome data.
The airway microbiome in patients with severe asthma: Associations with disease features and severity  Yvonne J. Huang, MD, Snehal Nariya, BS, Jeffrey.
Enrichment of members of KEGG Orthology (KOs) families across MBTA surfaces before and after P. acnes removal. Enrichment of members of KEGG Orthology.
Phylogenetic tree of genome-sequenced bacterial strains from the Populus microbiome. Phylogenetic tree of genome-sequenced bacterial strains from the Populus.
Distinctive subpopulations of the intestinal microbiota are present in women with unexplained chronic anovulation  Hiroyuki Sasaki, Kazuhiro Kawamura,
Cluster analysis and pathway-based characterization of differentially expressed genes and proteins from integrated proteomics. Cluster analysis and pathway-based.
Bacteria significantly correlated with DE miRNAs.
Relative abundances of dominant phyla in each treatment and indicator genera in PyOM300, PyOM700, and control soils. Relative abundances of dominant phyla.
Locations of genes that exhibited decreased levels of distribution of the RpoZ-defective RNAP. The genes that showed decreased-level distribution of RpoZ-defective.
Differential relative abundance of major taxa for successive pairwise comparisons. Differential relative abundance of major taxa for successive pairwise.
The similar shifts of gut microbiota in IBD across cohorts.
Comparison of the original ITS primer pair and the new, modified ITS primer pair. Comparison of the original ITS primer pair and the new, modified ITS.
Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.
Diagram of experimental design.
Cecal metabolome during C. difficile colonization and infection.
Effects of FMT in sows and/or offspring on median relative abundances (%) of bacterial phyla (A and B) and genera (C and D) in offspring fecal samples.
Aboveground and belowground samples showed differences in their bacterial community structures and compositions, while bulk soil and root communities differed.
Transcription of cellulolytic genes disaggregated by genome.
RNA-seq of Glutamicibacter arilaitensis alone and cocultured with Penicillium sp. 12. RNA-seq of Glutamicibacter arilaitensis alone and cocultured with.
Co-occurrence network in tongue microbiota of 506 elderly adults built from SparCC correlation coefficients between sequence abundances. Co-occurrence.
A case study of RPCA feature loadings on real data sets; sponge (left; A and C) and sleep apnea (right; B and D). A case study of RPCA feature loadings.
Gut microbiota components influenced by AXOS intake.
Benchmarks of OTU picking tools on artificial communities.
Relative abundance (RA) of individual phyla that are strongly correlated (|rs| = >0.6; q =
Box plots displaying the median, minimum, maximum, and first and third quartiles of the percentage of the 25 members of the core microbiome detected in.
Relationship between relative abundance and transcription/abundance ratio (logarithmic scales) of OTUs (brown), ZOTUs (turquoise), and population genomes.
Cyanophage-host interactions from metatranscriptomic data.
Initial analysis of the transcriptional effects in eight carbon storage mutants (1 to 8; ΔphbA, phbB::ΩSpSm, ΔphbAB, ΔphbC, ΔphaZ, ΔbdhA, acsA2::Tn5, glgA1ΔPstI)
Fig. 1 A phylogenetically cohesive core rumen microbiome was found across farms with highly conserved hierarchical structure and tight association to overall.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.
Enrichment of KEGG pathways in microbial genes in different samples.
PCoA plots of subgingival samples with disease classification overlaid
Walls talk: Microbial biogeography of homes spanning urbanization
Activity of SW480 qHTS runs and podophyllotoxin titration–response profiles of from library and control samples. Activity of SW480 qHTS runs and podophyllotoxin.
Interkingdom interactions between fungi and bacteria.
Double-hierarchical clustering analysis.
Taxonomical distribution of the major phyla in the inoculum and gnotobiotic chicken gut at day 9 and day 18. Taxonomical distribution of the major phyla.
Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.
Fig. 2 The outcome of plant-pathogen interaction is associated with the initial soil microbiome composition and functioning. The outcome of plant-pathogen.
Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.
Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.
Northern shovelers may have unique microbiome differences with respect to IAV infection, relative to the other duck species. Northern shovelers may have.
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
Relative abundance and expression of the 10 most abundant MAGs in the bioreactor at day 96. Relative abundance and expression of the 10 most abundant MAGs.
Presentation transcript:

Distribution of the bacterial taxa that exhibit the greatest log fold changes in mean relative abundance. Distribution of the bacterial taxa that exhibit the greatest log fold changes in mean relative abundance. Heat maps show the log2 fold changes of the top 50 taxa that either increase (shown in red hues) or decrease (shown in blue hues) (a) once exposed to a preservation method (for 1 week at −20°C and a few hours in the other preservatives) and (b) over time within a preservation method (from left to right: 1, 4, and 8 weeks, except for −20°C, for which the 4- and 8-week time points are shown). Taxa are grouped by bacterial phyla (A, Actinobacteria; B, Bacteroidetes; C, Cyanobacteria; F, Firmicutes; L, Lentisphaeria; P, Proteobacteria) and colored by bacterial class. (c) A line graph shows the total fraction of OTUs that show a greater than 10-fold change in relative abundance for each stabilization method at each time point compared to the fresh sample. 70etoh and 95etoh, 70% and 95% ethanol, respectively. Se Jin Song et al. mSystems 2016; doi:10.1128/mSystems.00021-16