Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses S. Cordey,

Slides:

Advertisements

Similar presentations

Models for the organisation of hospital infection control and prevention programmes B. Gordts Clinical Microbiology and Infection Volume 11, Pages

Advertisements

C.-S. Lee, J.-H. Lee Clinical Microbiology and Infection

Twelve years of dengue surveillance in Belgian travellers and significant increases in the number of cases in 2010 and 2013 J. Verschueren, L. Cnops,

Rapid antigen testing for the surveillance of influenza epidemics

A. Bergman, D. Heimer, N. Kondori, H. Enroth

Matrix-assisted laser desorption ionization time-of-flight mass spectrometry for the rapid identification of yeasts causing bloodstream infections A.K.

Intrahepatic hepatitis B virus replication and liver histology in subjects with occult hepatitis B infection D.K.-H. Wong, J. Fung, C.-K. Lee, W.-K.

Gut bacterial microbiota and obesity

I.J. Schalk Clinical Microbiology and Infection

Prospective assessment of rapid diagnostic tests for the detection of antibodies to hepatitis C virus, a tool for improving access to care S. Chevaliez,

O.J. Dyar, G. Tebano, C. Pulcini Clinical Microbiology and Infection

D. Khalil, M. Hultin, M.U. Rashid, B. Lund

E. S. Björnsdóttir, E. R. Martins, H. Erlendsdóttir, G. Haraldsson, J

Control of multidrug-resistant Gram-negative bacteria in low- and middle-income countries—high impact interventions without much resources N. Singh,

Risk factors for cryptococcal infection among patients with rheumatoid arthritis receiving different immunosuppressive medications T.-L. Liao, Y.-M.

Migrant health—a cause for concern?

The use of dried cerebrospinal fluid filter paper spots as a substrate for PCR diagnosis of the aetiology of bacterial meningitis in the Lao PDR I. Elliott,

Clinical characteristics of Haemophilus influenzae meningitis in Denmark in the post- vaccination era T.I. Pedersen, M. Howitz, C. Østergaard Clinical.

C.-S. Lee, J.-H. Lee Clinical Microbiology and Infection

Emerging issues on hepatitis C virus infection after the introduction of the Directly Acting Antivirals G. Ippolito Clinical Microbiology and Infection

J.-P. Van geertruyden Clinical Microbiology and Infection

Hepatitis B and C virus-related carcinogenesis

Virological tools to diagnose and monitor hepatitis C virus infection

Refugee crisis and re-emergence of forgotten infections in Europe

Louis Pasteur, from crystals of life to vaccination

Dermatitis by Dermatophilus congolensis

Should standardized susceptibility testing for microbial biofilms be introduced in clinical practice? T. Coenye, D. Goeres, F. Van Bambeke, T. Bjarnsholt

The importance of enterovirus surveillance in a Post-polio world

Prevalence of Toscana virus antibodies in residents of Croatia

H. Erdem, K. Ergunay, A. Yilmaz, H. Naz, F. Akata, A. S. Inan, A

Trends in length of stay, mortality and readmission among patients with community- acquired bacteraemia M. Søgaard, R.W. Thomsen, R.B. Bang, H.C. Schønheyder,

Metagenomic analysis of viral genetic diversity in respiratory samples from children with severe acute respiratory infection in China Y. Wang, N. Zhu,

Vector control: a cornerstone in the malaria elimination campaign

Prevalence of antibodies to phleboviruses within the sand fly fever Naples virus species in humans, northern Greece V. Anagnostou, A. Papa Clinical.

Polymerase-chain reaction/electrospray ionization-mass spectrometry for the detection of bacteria and fungi in bronchoalveolar lavage fluids: a prospective.

Performance of hepatitis C virus (HCV) direct-acting antivirals in clinical trials and daily practice J.E. Arends, P.A.M. Kracht, A.I.M. Hoepelman Clinical.

F. Magurano Clinical Microbiology and Infection

S. Imbert, J.-Y. Brossas, M. Palous, I. Joly, I. Meyer, A. Fekkar

Elements of design: the knowledge on which we build

Metagenomics and probiotics

Previously unknown species of Aspergillus

Detection of, and frequent co-infection with, human bocavirus in faecal specimens from children in Wuhan, China Y. Huang, P. Mao, H. Wang Clinical Microbiology.

Detection of Wolbachia genes in a patient with non-Hodgkin's lymphoma

Sexually acquired Zika virus: a systematic review

Systematic review of antibiotic consumption in acute care hospitals

Y. Huang, B. Yang, W. Li Clinical Microbiology and Infection

R. Slinger, I. Moldovan, N. Barrowman, F. Chan

Accurate hepatitis C virus genotyping and selection of optimal therapy: lessons from a St Petersburg strain infection E. Knops, E. Heger Clinical Microbiology.

Vaccinations against respiratory tract infections at Hajj

C. Tamalet, P. Colson, E. Decroly, C. Dhiver, I. Ravaux, A. Stein, D

Repeat lumbar puncture in adults with bacterial meningitis

C. Alkan, A. B. Allal-Ikhlef, S. Alwassouf, A. Baklouti, G

Response to a Letter to the Editor by Joachim Denner on HIV infection en route to endogenization: two cases Philippe Colson, Yves Levy, Didier Raoult

Dynamics of hepatitis B virus quasispecies heterogeneity in association with nucleos(t)ide analogue treatment determined by MALDI-TOF MS M. Rybicka,

Increasing numbers of hospitalizations and deaths with mention of Clostridium difficile infection, north-eastern Italy, 2008–2013 U. Fedeli, E. Schievano,

Clinical Microbiology and Infection

Clinical Microbiology and Infection

J.-M. Rolain, C. Abat, P. Brouqui, D. Raoult

M.T. Pérez-Rodríguez, A. Sousa, P. Martínez-Cueto, A. Ocampo

A. van Samkar, M. C. Brouwer, Y. Pannekoek, A. van der Ende, D

Survival of rhinoviruses on human fingers

Virology: a scientific discipline facing new challenges

Modelling during an emergency: the 2009 H1N1 influenza pandemic

R. Khatib, G. Simeunovic, M. Sharma, M. G. Fakih, L. B. Johnson, L

Are we losing the fight against malaria one more time?

J.L. Balcázar Clinical Microbiology and Infection

Impact of antibiotic restrictions: the patient's perspective

The burden of chikungunya in the Pacific

CMI readers' survey Clinical Microbiology and Infection

The future of diagnostic bacteriology

Presentation transcript:

Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses S. Cordey, M. Bel, T.J. Petty, M. Docquier, L. Sacco, L. Turin, P. Cherpillod, S. Emonet, M. Louis-Simonet, E.M. Zdobnov, J. Ambrosioni, L. Kaiser Clinical Microbiology and Infection Volume 21, Issue 4, Pages 387.e1-387.e4 (April 2015) DOI: 10.1016/j.cmi.2014.11.010 Copyright © 2014 European Society of Clinical Microbiology and Infectious Diseases Terms and Conditions

FIG. 1 ezVIR analysis phase-1 report. Plot depicts: (1) the detection of Toscana virus (TOSV) L- and S-segment sequences in the cerebrospinal fluid (CSF) specimen, (2) for each detected TOSV segment: the per cent genome coverage (x-axis), the maximum coverage depth (y-axis), the total covered length in base pairs (area of the coloured dot) and the genome size group (grey outer ring). More details, including the cross-referenced segment IDs, are contained in the corresponding table. Clinical Microbiology and Infection 2015 21, 387.e1-387.e4DOI: (10.1016/j.cmi.2014.11.010) Copyright © 2014 European Society of Clinical Microbiology and Infectious Diseases Terms and Conditions