Null modeling approach for quantifying influences of assembly processes and connecting those processes to biogeochemical function. Null modeling approach.

Slides:



Advertisements
Similar presentations
Community Phylogenetic structure with R. Central question in community ecology What processes are responsible for the identity and relative abundances.
Advertisements

Spatial statistics Lecture 3.
KRZYSZTOF PIETRUSZKA, ph.D. www: www:
The Two Factor ANOVA © 2010 Pearson Prentice Hall. All rights reserved.
Agenda for January 27 th Administrative Items/Announcements Attendance Handout: presentation signup Pictures today! Finish this week’s topic: Research.
9. SIMPLE LINEAR REGESSION AND CORRELATION
Regression Chapter 10 Understandable Statistics Ninth Edition By Brase and Brase Prepared by Yixun Shi Bloomsburg University of Pennsylvania.
CONNECTIVITY MATRIX (6 REALIZATIONS) Passive larvae Active larvae Retention increases, heterogeneity decreases.
Integers and Rational Numbers
Basic Statistics. Basics Of Measurement Sampling Distribution of the Mean: The set of all possible means of samples of a given size taken from a population.
Chapter 15 Data Analysis: Testing for Significant Differences.
PHYLOGENETIC DIVERSITY Methods and applications Divya B. PK lab, CES, IISc.
Measures of Dispersion. Introduction Measures of central tendency are incomplete and need to be paired with measures of dispersion Measures of dispersion.
Copyright © Ed2Net Learning, Inc.1 Comparing and Ordering Integers.
Correlation & Regression Analysis
Using Measures of Position (rather than value) to Describe Spread? 1.
Statistics 101 Chapter 3 Section 3.
Quantifying Scale and Pattern Lecture 7 February 15, 2005
Nonmetric multidimensional scaling (NMDS) ordination of variation in bacterial community structure of tree phyllosphere along a gradient of urban intensity.
ANATOMY OF THE STANDARD DEVIATION
Multivariate community analysis
Taxonomic composition of subway microbial communities.
Do you know population SD? Use Z Test Are there only 2 groups to
Predict Failures with Developer Networks and Social Network Analysis
Classification (Dis)similarity measures, Resemblance functions
Properties of Functions
Microbial community dissimilarity.
Changes in archaeal diversity during great ape diversification.
Year-3 The standard deviation plus or minus 3 for 99.2% for year three will cover a standard deviation from to To calculate the normal.
Heatmap summarizing the significant (P < 0
Microbial diversity was broadly compared across three unique built-environment study sites for 16S rRNA amplicon and shotgun metagenome sequencing. Microbial.
Volume 11, Issue 4, Pages (April 2015)
Comparing Fractions Name: ______________________________

Objective - To graph ordered pairs.
Product moment correlation
Gut microbial diversity of mice in voluntary and forced exercise groups. Gut microbial diversity of mice in voluntary and forced exercise groups. Weighted.
Microbial diversity of the 10 body locations sampled.
Optimized KatharoSeq protocol applied to a JPL cleanroom facility.
Temporal and spatial patterns.
Taxonomic composition of the baboon and human gut microbiota.
Nonmetric multidimensional scaling (NMDS) plots of fecal and biopsy sample-based Bray-Curtis distances computed from the relative abundances of the 258.
Comparison of microbial communities in adult and children visitors and villagers. Comparison of microbial communities in adult and children visitors and.
Distributions of pairwise correlation coefficients from cooccurrence models computed from temporal data (fecal) and spatial data (biopsy samples; means.
Structure of benthic microbial communities of residential and industrial land use types before and after two rain events in urban waterways are shown.
Comparison of distal gut metabolite profiles between Egyptian and U. S
Patterns of Rare and Abundant Marine Microbial Eukaryotes
Comparison of the original ITS primer pair and the new, modified ITS primer pair. Comparison of the original ITS primer pair and the new, modified ITS.
Comparison of the modified 515f/806rB V4 primer pair and the 515f (modified)/926r primer pair. Comparison of the modified 515f/806rB V4 primer pair and.
Segregation of Object and Background Motion in Visual Area MT
Volume 19, Issue 5, Pages (May 2017)
Volume 14, Issue 6, Pages (December 2013)
Microbial community structure analysis.
Ch 11.1 Integers + Absolute Value
The COORDINATE PLANE The COORDINATE PLANE is a plane that is divided into four regions (called quadrants) by a horizontal line called the x-axis and a.
7th Grade Unit1 Operations with RationalNumbers
Integers and Absolute Value Unit 1 Lesson 5
Figure 3 Multiple sclerosis (MS) immunomodulatory treatments interferon-β (IFNB) and fingolimod (FTY720) result in global perturbation of the immune system.
Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.
Shifts in the microbial community compositions of the control and antibiotic groups. Shifts in the microbial community compositions of the control and.
Bray-Curtis beta diversity analysis of Kaneohe Bay (KB) ANG and JC bacterial communities. Bray-Curtis beta diversity analysis of Kaneohe Bay (KB) ANG and.
Coordinate Plane y axis x axis.
PCoA plots of subgingival samples with disease classification overlaid
Figure 1. Map of Alaska indicating the location of (A) the Caribou Poker Creek Research Watershed (CPCRW) and (B) the ... Figure 1. Map of Alaska indicating.
Relationships between antimicrobial chemicals, features of the built environment, and microbial communities. Relationships between antimicrobial chemicals,
Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.
Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.
Effect of bloom filtering on American Gut data.
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
Higher sub-OTU resolution, in combination with SEPP phylogenies, exposed relevant ecological signals. Higher sub-OTU resolution, in combination with SEPP.
Presentation transcript:

Null modeling approach for quantifying influences of assembly processes and connecting those processes to biogeochemical function. Null modeling approach for quantifying influences of assembly processes and connecting those processes to biogeochemical function. (a) In step 1, phylogenetic β-diversity is quantified with the beta-mean nearest taxon distance (β-MNTD) metric for all community pairs sampled within a given study system. The observed value (βMNTDobs) is compared to a null expectation when selection does not influence community assembly (βMNTDnull). The deviation is quantified as the beta nearest taxon index (βNTI) metric, with significance thresholds of −2 and +2. The fractions of pairwise comparisons falling below or above those thresholds indicate influences of deterministic selection. In step 2, the pairwise comparisons that were nonsignificant are evaluated with a second null model that uses Bray-Curtis dissimilarity. Observed values (B-Cobs) are compared to a null expectation when neither dispersal nor selection influences community assembly (B-Cnull). The deviation is quantified as the RCbray metric, with significance thresholds of −0.95 and +0.95. The fractions of pairwise comparisons falling below or above those thresholds indicate influences of dispersal. (b) The contour plot (modified from reference 16) shows how increasing influences of selection lead to increased biogeochemical rates and that increasing influences of dispersal decrease biogeochemical rates. The vertical dashed line indicates the minimal influence of dispersal. James C. Stegen mSystems 2018; doi:10.1128/mSystems.00167-17