BLASTN comparison of the R478 and pSSE ATCC plasmids.

Slides:

Advertisements

Similar presentations

Checklist for Site Reconnaissance (Sabatini et al_2002)

Advertisements

Comparison (θ) of the mean dinucleotide variability distribution for (A) genes with MAE vs. Comparison (θ) of the mean dinucleotide variability distribution.

Comparison (R) of the mean observed to expected dinucleotide distribution for (A) genes with MAE vs. Comparison (R) of the mean observed to expected dinucleotide.

Schematic view of SGI1-L and its specific features encountered in Morganella morganii strain LIM90. Schematic view of SGI1-L and its specific features.

Comparison of N. gonorrhoeae gene expression during infection in men and women in vivo. Comparison of N. gonorrhoeae gene expression during infection in.

The dicBF locus is conserved in E. coli species in different prophages

Crossing strategy for determining inheritance of virulence genes.

Design and use of a high-throughput screen to identify tumor cell-induced gene activation events in Salmonella. Design and use of a high-throughput screen.

Highly simplified schema (not true to scale) of the composition of the SCC family integrated into the S. aureus chromosome (blue). Highly simplified schema.

The evolution of antibiotic resistance associates with a mutation in an efflux pump. The evolution of antibiotic resistance associates with a mutation.

Heat maps of stress- and development-related genes differentially expressed between the osdR mutant and its parent, S. coelicolor M145. Heat maps of stress-

Copy number estimation for Bacillus anthracis plasmids pXO1 and pXO2.

Genomic comparison of thermotolerance islands.

Venn diagram of blaKPC-containing plasmids detected in the environment and patients. Venn diagram of blaKPC-containing plasmids detected in the environment.

Golden Gate assembly of transposon delivery vectors from part vectors.

Map of the pSSE ATCC plasmid.

Transcription levels of metabolic pathways and genes in mother and infant pair 4 at time point 2. Transcription levels of metabolic pathways and genes.

Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number. Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number.

Correlation of mouse gene expression with bacterial gene expression.

Deletion of terC confers a tellurite-sensitive phenotype.

Comparison of the variable regions of (A) pHNZY32, pHNZY118, and pHNAH24; (B) pHNMCC14; (C) pHNFKU92; (D) pE80; (E) pECB11; (F) p42-2; and (G) pSLK172-2.

Gene-wise Tajima’s D values and gene lengths.

Figure 1. Structure of resistance islands containing dfrA35 in IncC plasmids. (a) pEc158 resistance island and (b) ... Figure 1. Structure of resistance.

Bacteria significantly correlated with DE miRNAs.

Relative abundances (percent) of genes that code for key enzymes involved in direct and indirect butyrate production during glucose fermentation at different.

(M9) WPDxGxP (M8) TxxD FWxMxW (M5) (M2) (M1) IAxQGP (M4) QTxx (M10)

Summary figure illustrating our hypotheses.

K-Means clustering of protein and mRNA expression patterns after PPAR agonists treatments. k-Means clustering of protein and mRNA expression patterns after.

Localization of selected clones in mammalian COS-7 cells.

Pathway analysis of genes upregulated after RSV infection.

Cross-validation (CV) results for Crohn’s disease study: most frequent taxa and most frequent balances selected in the CV procedure compared to the global.

The Structure of the β-Catenin/E-Cadherin Complex and the Molecular Basis of Diverse Ligand Recognition by β-Catenin Andrew H. Huber, William I. Weis

(a, b) Hypothetical scenario where 2 samples of 2 proportions may explain two different scenarios in the environment. (a, b) Hypothetical scenario where.

Molecular network analysis of UPLC-Q-TOF MS2 data.

Structure of the MCS in backbone vectors for the BiFC plasmids.

Figure 1. Genomic organization of the murine Pcln1 gene.

GATC sites where methylation changes over time correspond to a change in gene expression in a dam mutant. GATC sites where methylation changes over time.

Comparisons of plasmids related to pSJ_255.

Distribution of ARGs in RefSoil genomes and plasmids.

Hammerhead ribozyme structure: U-turn for RNA structural biology

Assessment of plasmid lateral transfer between representative B

Relative growth of transcription factor knockout mutants on different sulfur sources. Relative growth of transcription factor knockout mutants on different.

Heatmaps reveal significantly affected pathways by 4 mg/liter polymyxin B (PMB) in strains PAK and PAKpmrB6 at 1 h using transcriptomics. Heatmaps reveal.

Genetic synteny is highly conserved between TLPQC (transmissible loci for protein quality control). Genetic synteny is highly conserved between TLPQC (transmissible.

LC8 is structurally variable but conserved in sequence.

Sequence variation of 16S rRNA gene primer-binding sites.

The two-plasmid CRISPRi-system.

Phylogenetic diversity (PD) by signiﬁcant market integration factors, house modernity (A), power usage (B), and house modernity and power usage (C). Phylogenetic.

Expression of selected genes in the ΔSMcomS strain in response to increasing concentrations of XIP. RT-PCR analysis of gene expression was performed in.

Principal-coordinate analysis (PCoA) (Hellinger distance metric) of plant community (A), soil chemistry (B), 16S rRNA gene (prokaryotic) (C), and ITS (fungal)

Enrichment of KEGG pathways in microbial genes in different samples.

Transcriptomic changes in strains PAK and PAKpmrB6 in response to polymyxin B (PMB). Transcriptomic changes in strains PAK and PAKpmrB6 in response to.

KEGG categories of host DEGs (up- and downregulated genes) enriched at selected points after φAbp1 infection. KEGG categories of host DEGs (up- and downregulated.

P-network of 2,616 prokaryote genomes based on chromosomal sequences with rRNA genes removed. P-network of 2,616 prokaryote genomes based on chromosomal.

Fig. 3 Classification of gene essentiality by transposon mutagenesis.

Identification of a ufo1 Candidate Gene from the Mapping Region.

Fill in missing numbers

Distribution of the diversity numbers of antibiotic resistance and virulence factor protein families by environmental metagenomes’ protein family richness.

Comparison of the predicted binding models of mHA1, mHA6, and mHA 11 to the tubulin protein with that of DAMA-colchicine in the crystal structure. Comparison.

L. Poirel, T. Vu Nguyen, A. Weintraub, C. Leviandier, P. Nordmann

Fill in missing numbers

Normalized abundance of tetracycline resistance genes in Swedish infants by AMR++. Normalized abundance of tetracycline resistance genes in Swedish infants.

Genomic characterization of Bacillus cereus sensu lato group.

Inhibition zone diameter (mm) Resistance/Sensitivity

Fig. 2 Number of years that would have been required for the observed vertebrate species extinctions in the last 114 years to occur under a background.

Venn diagram of the distribution of protein CDSs inferred from the genomes of A. hydrophila ATCC 7966T, E1, and E2. Venn diagram of the distribution of.

Comparison of the van gene clusters.

Genomic instability is a core feature of ovarian cancer that frequently involves DNA-damage repair genes. Genomic instability is a core feature of ovarian.

Presentation transcript:

BLASTN comparison of the R478 and pSSE ATCC-43845 plasmids. BLASTN comparison of the R478 and pSSE ATCC-43845 plasmids. The backbone for R478 is highly conserved in pSSE ATCC-43845. The majority of differences between the two plasmids reside between the tellurite resistance island and CHASRI (copper homeostasis and silver resistance island). The lack of any known antibiotic resistance genes, such as aphA (kanamycin) or cat (chloramphenicol), on pSSE ATCC-43845 is also noted. The integration site for Tn10 with tetracycline resistance is in BFF41_25185 in pSSE ATCC-4384. Heavy metal resistance genes (purple), antibiotic resistance genes (teal), TLPQC genes (red), transposase genes (blue), CHASRI genes (silver), and rep (magenta) and the mercury resistance (mer), methylase (dam), tellurite resistance (ter), arsenic resistance (ars), and replicase (rep) genes are indicated. Scott V. Nguyen et al. mSystems 2017; doi:10.1128/mSystems.00190-16