Interactive plotting with ggplot and shiny in Galaxy

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Presentation transcript:

Interactive plotting with ggplot and shiny in Galaxy by Jochen Bick

The idea change existing ggplot2 galaxy tools and make them interactive use shiny and/or plotly for the implementation add more plots available with ggplot2 barplot violine PCA heatmap ...

more plot types there are many more options for plots with geom_* available. not all of them are frequently used http://sape.inf.usi.ch/quick-reference/ggplot2/geom

Existing ggplot2 Galaxy apps

Existing ggplot2 Galaxy apps

Existing ggplot2 Galaxy apps

Existing ggplot2 Galaxy apps

DEMO with RStudio adapted from: https://github.com/JoachimGoedhart/PlotsOfData

Outlook use features from plot.ly connect shiny app with Galaxy add more plot option to provide useful plots https://plot.ly/