Unweighted UniFrac PCoA plots.

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DRAINMOD APPLICATION ABE 527 Computer Models in Environmental and Natural Resources.

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Linnea K. Honeker*, Julia W. Neilson, Jon Chorover, Raina M. Maier

X AND R CHART EXAMPLE IN-CLASS EXERCISE

Taxonomic composition of subway microbial communities.

Microbial community dissimilarity.

Microbial diversity was broadly compared across three unique built-environment study sites for 16S rRNA amplicon and shotgun metagenome sequencing. Microbial.

Dysbiosis of gut microbiota patterns in Chinese patients with IBD

Effect of protocol modifications.

Blooms and effect sizes.

Alterations in the Gut Microbiota Associated with HIV-1 Infection

Microbiota and Host Nutrition across Plant and Animal Kingdoms

Gut microbial diversity of mice in voluntary and forced exercise groups. Gut microbial diversity of mice in voluntary and forced exercise groups. Weighted.

Microbial diversity of the 10 body locations sampled.

Optimized KatharoSeq protocol applied to a JPL cleanroom facility.

Voluntary but not forced exercise alters food consumption in mice.

Putative MBTA microbial community sources.

Magnitude of mRNA fold change is best predictor of mRNA-to-protein correlation. Magnitude of mRNA fold change is best predictor of mRNA-to-protein correlation.

Taxonomic composition of the baboon and human gut microbiota.

The protein-protein interaction (PPI) network of four habitats, i. e

(a) Correspondence analysis of 88 soil samples.

Relative abundances (percent) of genes that code for key enzymes involved in direct and indirect butyrate production during glucose fermentation at different.

Bacterial community dissimilarity, as measured by weighted UniFrac, a quantitative measurement (a), and unweighted UniFrac, a qualitative measurement (b),

Enterotypes of the distal gut microbial profiles.

Comparison of the original ITS primer pair and the new, modified ITS primer pair. Comparison of the original ITS primer pair and the new, modified ITS.

Comparison of the modified 515f/806rB V4 primer pair and the 515f (modified)/926r primer pair. Comparison of the modified 515f/806rB V4 primer pair and.

Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.

Diagram of experimental design.

Differences in gut bacterial microbiota composition are associated with (A) degree of aeroallergen sensitisation; (B) lung function as measured by FEV1.

The Inuit microbiome has a community composition similar to that of the Western microbiome. The Inuit microbiome has a community composition similar to.

Experimental design. Experimental design. (a) Configuration of the sampling site in Flagstaff office 1. This configuration was similar to those set up.

Figure 2 Overall community differences in the gut microbiota of treated or untreated patients with MS Overall community differences in the gut microbiota.

16S rRNA gene survey reveals a moderate impact of formula-based B

(A) Weighted UniFrac PCoA plot showing the dissimilarities among all sample types from Suffolk Merlot and including Californian must. (A) Weighted UniFrac.

Aboveground and belowground samples showed differences in their bacterial community structures and compositions, while bulk soil and root communities differed.

Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.

Trends in metabolite predictability in terms of key gene contributors.

(A) Box-and-whisker plots illustrate the median, maximum, minimum, and first and third quartiles of the distribution of the number of observed OTUs and.

Belowground microbiome community responses.

Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.

Microbial composition of mother and infant samples and shared bacteria within mother-infant pairs. Microbial composition of mother and infant samples and.

A principal-coordinate analysis plot of UniFrac distances from de novo OTUs as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.

Microbial communities of the differently treated mice with lupus cluster separately after treatment. Microbial communities of the differently treated mice.

Fig. 2 Absolute recovery of species richness and relative recovery of species richness and composition in relation to stand age for Neotropical secondary.

Benchmarks of OTU picking tools on artificial communities.

Relative abundance (RA) of individual phyla that are strongly correlated (|rs| = >0.6; q =

(a) A band table where the y axis data represent individual OTUs and the x axis data represent samples. (a) A band table where the y axis data represent.

(A and B) Unweighted (A) and weighted (B) UniFrac clustering of three 16S rRNA hypervariable regions using fragment insertion SATé-enabled phylogenetic.

mtDNA genotypes correlate with gut microbiota composition.

A principal-coordinate analysis plot of UniFrac distances from Deblur as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.

Relative growth of transcription factor knockout mutants on different sulfur sources. Relative growth of transcription factor knockout mutants on different.

Pairwise UniFrac distances for each consecutive-time pair from the same sample, aggregated and smoothed to distribution functions before and while taking.

A principal-coordinate analysis plot of UniFrac distances from UNOISE2 as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.

Principal-coordinate analysis (PCoA) (Hellinger distance metric) of plant community (A), soil chemistry (B), 16S rRNA gene (prokaryotic) (C), and ITS (fungal)

Comparison of the original 515f/806r primer pair and the new, modified 515f/806rB primer pair. Comparison of the original 515f/806r primer pair and the.

Above- and belowground community structure along cheatgrass, spotted knapweed, and leafy spurge invasion transects. Above- and belowground community structure.

Comparison of gut microbiota alpha diversity in different preservatives based on 16S rRNA gene V3-V4 amplicon sequencing. Comparison of gut microbiota.

PCoA plots of subgingival samples with disease classification overlaid

ICU stays result in drastic community changes.

Beta-diversity analyses of microbial taxa recovered from ATM keypads.

Table 5. Water quality A3 well during pumping test

Pancreatic adenocarcinoma, chronic pancreatitis, and normal pancreas samples can be distinguished on the basis of gene expression profiling. Pancreatic.

Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.

Unsupervised principal-component analysis (PCA) of 129 seroreactive antigens for adults and children from different geographical locations. Unsupervised.

The primary axis scores of each sample from a constrained ordination of principal coordinates (CAP) for the temperature profile of each city are indicated.

Median unweighted UniFrac distances between three dolphin habitats: Shedd, MMP, and Sarasota. Median unweighted UniFrac distances between three dolphin.

Comparison of distal gut microbiota composition between Egyptian and U

Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.

Higher sub-OTU resolution, in combination with SEPP phylogenies, exposed relevant ecological signals. Higher sub-OTU resolution, in combination with SEPP.

Infant skin and oral mycobiomes by birth mode.

Fig. 1 Uplift of the Isthmus of Panama and global sea levels over the last 20 My. Uplift of the Isthmus of Panama and global sea levels over the last 20.

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Unweighted UniFrac PCoA plots. Unweighted UniFrac PCoA plots. (A) Combined data from the present Atacama Desert study and from Fierer et al. (19). (B to E) Atacama-only data. (A) Samples colored by their geographic origins. (B to F) Samples colored by soil properties, where light colors indicate the low end of the specified range and dark colors indicate the high end of the specified range. These data illustrate statistical results presented in Table S3, specifically, that average soil relative humidity is a better predictor of sample composition in the Atacama Desert than high soil temperature, electrical conductivity, or pH. Julia W. Neilson et al. mSystems 2017; doi:10.1128/mSystems.00195-16