Locked nucleic acid (LNA): fine-tuning the recognition of DNA and RNA

Slides:



Advertisements
Similar presentations
MOL8002 – Molecular mechanisms of host defence Methods of molecular biology Recognition of nucleic acids hybridization, sequencing, PCR, arrays Protein.
Advertisements

Macromolecules Nucleic Acids. Nucleic Acid Nucleic acids include deoxyribonucleic acid and ribonucleic acid Nucleic acids are employed in cells as both.
DNA Structure Replication Functions (Stores and provides copies of genetic material- genes) – Blueprint (genes) for Protein Synthesis (Enzymes and cell.
More regulating gene expression. Fig 16.1 Gene Expression is controlled at all of these steps: DNA packaging Transcription RNA processing and transport.
Regulating Gene Expression from RNA to Protein. Fig 16.1 Gene Expression is controlled at all of these steps: DNA packaging Transcription RNA processing.
1 Molecular Cancer Therapeutics Antisense Oligonucleotides RNA interference (RNAi) Vũ Mạnh Huỳnh Tiến Sĩ Hóa Học.
Synthesis of pyrimidine bases
Locked Nucleic Acid - Novel DNA Anolog MEC Meeting Hanyang University Proteome Research Lab Park, Ji-Yoon.
Newer method to sequence whole genomes –Uses allyl protecting group: Sequencing by Synthesis.
DNA What is the Function of DNA?. Nucleic Acids : Vocab Translation page 183Translation Transcription Protein Synthesis RNA DNA Complementary Introns.
DNA-Protein Interactions & Complexes. Prokaryotic promoter Consensus sequence is not present in majority of prokaryotic promoters. Sequence motifs.
Date of download: 7/8/2016 Copyright © 2016 American Medical Association. All rights reserved. From: A Renaissance for Antisense Oligonucleotide Drugs.
A-LEVEL BIOLOGY Epigenetic control of gene expression in eukaryotes
Gene Silencing by using morpholino molecules
Control of Gene Expression
Benchmark Review, Spring
Volume 22, Issue 5, Pages v-vi (May 2015)
Regulation of Gene Expression by Eukaryotes
RNA-Directed DNA Methylation: Getting a Grip on Mechanism
more regulating gene expression
Regulation of Gene Expression
Molecular Biology Select
Oligonucleotide Delivery to the Lung: Waiting to Inhale
Figure 1 Chemical modifications of the ASO backbone
Figure 2 Functional mechanisms of ASOs
Genomic Effects of Polyamide/DNA Interactions on mRNA Expression
DNA structure and gene expression
RNase E Finds Some sRNAs Stimulating
Corrigendum to: “Display cloning: functional identification of natural product receptors using cDNA-phage display”  Paul P Sche, Kathleen M McKenzie,
Prediction of protein structure
Adding Specificity to Artificial Transcription Activators
TRANSCRIPTION AHL Topic 7.3 IB Biology Miss Werba.
Haunting the HOXA Locus: Two Faces of lncRNA Regulation
Glen F. Deleavey, Masad J. Damha  Chemistry & Biology 
Retinoic Acid Inhibits Downregulation of ΔNp63α Expression During Terminal Differentiation of Human Primary Keratinocytes  Casimir Bamberger, Hartwig.
Aptamers Meet Allostery
The Small RNA IstR Inhibits Synthesis of an SOS-Induced Toxic Peptide
A Dead End for MicroRNAs
Kathleen M. Schoch, Timothy M. Miller  Neuron 
Chimeric RNA/DNA oligonucleotide-based gene therapy
Functional Dissection of sRNA Translational Regulators by Nonhomologous Random Recombination and In Vivo Selection  Jane M. Liu, Joshua A. Bittker, Maria.
RNA-DNA Triplex Formation by Long Noncoding RNAs
The Emerging World of Synthetic Genetics
Molecular Therapy - Nucleic Acids
Molecular Therapy - Nucleic Acids
Sensing temperature Current Biology
Recognition of Chromosomal DNA by PNAs
In Search of an RNA Replicase Ribozyme
Expression of the 11β-hydroxysteroid dehydrogenase 2 gene in the mouse
BIO307- Bioengineering principles SPRING 2019
Gyongyi Szabo, Peter Sarnow, Shashi Bala  Journal of Hepatology 
Volume 21, Issue 8, Pages v-vi (August 2014)
siRNA Versus miRNA as Therapeutics for Gene Silencing
Antisense molecules: A new class of drugs
Regulatory RNAs in Bacteria
Molecular Therapy - Nucleic Acids
Coby B. Carlson, Momchilo Vuyisich, Barry D. Gooch, Peter A. Beal 
Volume 21, Issue 2, Pages (February 2014)
Volume 30, Issue 2, Pages (February 2009)
DNA, RNA and Genes Science 10 – 2017/18 Mrs. Day.
Volume 7, Issue 6, Pages R147-R151 (June 2000)
Jiaxin Hu, Jing Liu, David R. Corey  Chemistry & Biology 
Adoptively transferred late allergic response is inhibited by IL-4, but not IL-5, antisense oligonucleotide  Sophie Molet, PhD, David Ramos-Barbón, MD,
Volume 2, Issue 1, Pages 1-4 (January 1994)
Drug target miRNAs: chances and challenges
Triplex-forming Peptide Nucleic Acids Induce Heritable Elevations in Gamma-globin Expression in Hematopoietic Progenitor Cells  Joanna Y Chin, Faisal.
Not miR-ly small RNAs: Big potential for microRNAs in therapy
Protein Synthesis.
Update on glucocorticoid action and resistance
Presentation transcript:

Locked nucleic acid (LNA): fine-tuning the recognition of DNA and RNA Dwaine A Braasch, David R Corey  Chemistry & Biology  Volume 8, Issue 1, Pages 1-7 (January 2001) DOI: 10.1016/S1074-5521(00)00058-2

Fig. 1 Nucleic acid analogs studied for their potential as antisense agents. Phosphodiester DNA, phosphorothioate DNA, PNA, phosphoramidate DNA, morpholino and LNA. Chemistry & Biology 2001 8, 1-7DOI: (10.1016/S1074-5521(00)00058-2)

Fig. 2 LNAs bind tightly to DNA. Melting curves for an LNA oligonucleotide bound to complementary DNA compared with the melting curve for the analogous all-DNA duplex. The sequence of the LNA is 5′-AGGATCmeTAGG-3′ (Braasch, unpublished results). Chemistry & Biology 2001 8, 1-7DOI: (10.1016/S1074-5521(00)00058-2)

Fig. 3 Mechanisms for inhibition of gene. (A) Inhibition of gene expression by an antisense oligonucleotide that binds to the 5′-untranslated region and blocks binding of the translation apparatus. (B) Promotion of RNA cleavage and inhibition of gene expression by an antisense oligonucleotide that can activate RNase H. Chemistry & Biology 2001 8, 1-7DOI: (10.1016/S1074-5521(00)00058-2)

Fig. 4 Comparison of the properties of LNA and PNA. Chemistry & Biology 2001 8, 1-7DOI: (10.1016/S1074-5521(00)00058-2)