The most strongly differentially abundant transcripts in E

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Supplementary Fig. S1: Hierarchical clustering of AUX/IAA genes, showing significant differential expression under at least one abiotic stress condition.
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Figure S2 A B Log2 Fold Change (+/- cAMP) Transcriptome (9hr)
Overview of the experimental setting.
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Exploration of the data set with age as a continuous variable.
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Differential abundance of bacterial families.
Selected KEGG genes that were significantly more abundant (>2 log2-fold change; FDR-adjusted P < 0.005) in plastic-associated metagenomic libraries than.
Performance of FDR methods on filtered microbiome data.
Family level bar plots generated in QIIME 1. 9
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Heatmaps of differential OTUs
Differential relative abundance of major taxa for successive pairwise comparisons. Differential relative abundance of major taxa for successive pairwise.
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Individual genes exhibit distinct stage-specific expression among female gametocytes. Individual genes exhibit distinct stage-specific expression among.
ncRNAs are developmentally regulated as well as mRNAs.
Individual genes exhibit distinct female-enriched expression patterns.
Gene expression changes upon modulation of DNMT3A transcripts.
Effect of small TbTim knockdown on cell growth.
C.2.10 Sample Questions.
Whole-genome comparison of E
C.2.8 Sample Questions.
Relative ITS2 abundance of Saccharomyces in stool over time as a Saccharomyces cerevisiae-free diet was consumed. Relative ITS2 abundance of Saccharomyces.
C.2.8 Sample Questions.
Log2-fold change in relative abundance of differentially abundant OTUs in PyOM300 and PyOM700 (a and b) and in Ps soil and Ar soil (c and d). Log2-fold.
T7 transcripts increase relative to E. coli transcripts over time.
Differential protein, mRNA, lncRNA and miRNA regulation by p53.
RNA abundance correlates with fitness.
RNA-Seq analysis of CYR1 cells in the adaptation to acid pH.
CiCo relation to linear transcripts.
C. difficile colonization alters gene transcription of taxonomic groups differentially between antibiotic pretreatments. C. difficile colonization alters.
Gut microbiota components influenced by AXOS intake.
Differentially abundant OTUs and higher taxonomic units across geography and diet. Differentially abundant OTUs and higher taxonomic units across geography.
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GATC sites where methylation changes over time correspond to a change in gene expression in a dam mutant. GATC sites where methylation changes over time.
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THE GROWTH ENVIRONMENT.
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The most strongly differentially abundant transcripts in E The most strongly differentially abundant transcripts in E. coli TolC during growth with carolacton (0.25 µg/ml). The most strongly differentially abundant transcripts in E. coli TolC during growth with carolacton (0.25 µg/ml). (A) Overview; (B) the most strongly differently regulated ncRNAs. The cutoff for differentially abundant transcripts was set at log2 FC of ≥ ±2 for general transcripts and ≥ ±2.5 for ncRNAs (FDR, ≤0.01), for at least one sample during the time course. Jannik Donner et al. mSphere 2017; doi:10.1128/mSphereDirect.00375-17