Schematic summarizing the various functions and features of MASH Suite Pro. Schematic summarizing the various functions and features of MASH Suite Pro.

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Sequence alignment of C-terminal phosphorylated plant aquaporins
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Novel phosphorylation sites on H+-ATPase proteins
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Top-down protein identification.
Distributions of the ELDP values and Mascot scores for all protein identifications.a, frequency of ELDP value returned by correct (gray bars) and incorrect.
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Schematic representation of proteogenomic annotation strategy.
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Relative abundance of proteins identified in MALDI IMS
A, Averaged full MS (ions converted to monoisotopic MW by Xcalibur Xtract) of Segment I-3 (see supplemental Fig. A, Averaged full MS (ions converted to.
Bottom-up proteomic characterization of MALDI IMS samples.
Skyline MS1 filtering graphical user interface.
Representative example of LAXIC performance for complex plant phosphoproteome. Representative example of LAXIC performance for complex plant phosphoproteome.A.
Success rates in validation of antibodies from external providers
Mass spectrometry identification of spots in 2D blue native gels of cytoplasmic membranes isolated from BL21(DE3)pLysS Spots in 2D BN gels of cytoplasmic.
Results from the Morris water task.
A, Base peak chromatogram of apomyoglobin digest generated by 0
Correction of translational start site by identification of N-terminal peptide. Correction of translational start site by identification of N-terminal.
NanoLC-MS/MS/based analysis of proteome differences between colonospheres and isogenic differentiated tumor cells. NanoLC-MS/MS/based analysis of proteome.
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Colonopshere-enriched proteins display functional interactions.
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Plot of the deviation of the predicted pI value of every peptide spectrum from the average pI calculated for each fraction for validated (a) and non-validated.
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High level view of the MAE algorithm.
Biochemical characterization of the protein phosphatases Saci-PP2A.
Schematic of the Q-OT-qIT hybrid mass spectrometer (Fusion).
Biochemical characterization of the protein phosphatases Saci-PTP.
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Illustration of σ down-regulation in bladder carcinomas.
2-D gel images visualized by Coomassie Brilliant Blue staining representing total proteins extracted from HCT-8 under apoptotic conditions in 2 mm Gln.
Relationship between protein concentration and several parameters
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Schematic of AIMS-to-MRM experiment.
GeneGoTM-based signaling pathway annotations of proteins identified in CD56+ NK cell subsets. GeneGoTM-based signaling pathway annotations of proteins.
Changes in protein expression during distinct stages of NK cell differentiation. Changes in protein expression during distinct stages of NK cell differentiation.
The average median S.D. and PEV reduction after applying different normalization methods compared with raw data. The average median S.D. and PEV reduction.
Monitoring the acetylation profile of mitochondrial proteins in SIRT3 KO mice. Monitoring the acetylation profile of mitochondrial proteins in SIRT3 KO.
MS3 for peptide identification and mapping phosphorylation sites
Model of the change in receptor structure on engagement of the ligand IFN-γ. Model of the change in receptor structure on engagement of the ligand IFN-γ.
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Schematic summarizing the various functions and features of MASH Suite Pro. Schematic summarizing the various functions and features of MASH Suite Pro. The major functions of MASH Suite Pro include protein identification, quantitation, and characterization of protein PTMs from top-down MS and MS/MS experiments. The program is equipped with various visualization components for the validation of the deconvolution results, identification results, and fragment ion assignments. Additional features include direct output of the graphics and customization of the program interface. Wenxuan Cai et al. Mol Cell Proteomics 2016;15:703-714 © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.