Phylogenetic tree of Leclercia spp

Slides:

Advertisements

Similar presentations

Unrooted phylogenetic tree showing the relationship between the human SLC2A gene family for all 14 members created using PHYLIP 3.6 softwareDistance between.

Advertisements

TABLE 2: Beijing strains assayed in THP-1 cells

Multiple sequence alignment of S

Schematic representation of the MAT loci of S. pombe, P. jirovecii, P

Elimination of symbiotic Aeromonas spp

Genotyping and origin of the emergent U. S

Connections identified on the basis of the genome sequence similarity of CPOs isolated from the environment and patients. Connections identified on the.

Schematic diagrams of genomic structure, the strategy for genomic cDNA cloning, and molecular characterization of unique features of three emergent U.S.

Venn diagram of blaKPC-containing plasmids detected in the environment and patients. Venn diagram of blaKPC-containing plasmids detected in the environment.

Multiple genotypes and subtypes of hepatitis B and C viruses in Belarus: similarities with Russia and western European influences C.M. Olinger, N.V.

Quantification of the effects of transport on population changes in both transport and cargo strains in the presence and absence of Amp. Quantification.

Maximum-likelihood phylogenetic tree of norovirus genomes belonging to genogroup GI, with the norovirus GII reference genome as an outlier. Maximum-likelihood.

Phylogenetic tree of perA A2-domain DNA sequence.

Comparative phylogenetic analysis of sapoviruses based on complete RdRp and VP1 nucleotide sequences. Comparative phylogenetic analysis of sapoviruses.

Placement of the ISS isolates into a core genome SNP phylogeny.

Phylogenetic tree of genome-sequenced bacterial strains from the Populus microbiome. Phylogenetic tree of genome-sequenced bacterial strains from the Populus.

Phylogeny of Shiga toxin-encoding phage from SDi/SJo S. sonnei isolates. Phylogeny of Shiga toxin-encoding phage from SDi/SJo S. sonnei isolates. (A) progressiveMauve.

Isolation and phylogenetic characterization of ISS strains.

Maximum-likelihood phylogeny of the household isolates from core SNPs

CPOs are able to persist and recombine in sink drains.

Maximum likelihood (ML) unrooted tree based on the full-length 16S rRNA genes (A) and 31 conserved single-copy genes (B) showing the phylogenetic position.

Phylogenetic tree of 170 Lactobacillus species.

Whole-genome phylogeny of meat and human clinical Escherichia coli ST131 isolates. Whole-genome phylogeny of meat and human clinical Escherichia coli ST131.

Phylogenetic tree of 38 Pseudomonas type strains, based on the V3-V5 region sequence of the 16S rRNA gene (V3 primer, positions 442 to 492; and V5 primer,

Periodicity of P. vortex swarming with Ampr E

Phylogenetic tree of K. variicola and K

Fig. 4. Exemplars of two patterns of nosocomial MRSA spread.

Mpr1 alters the extracellular environment of the fungus-endothelium interface. Mpr1 alters the extracellular environment of the fungus-endothelium interface.

iraL shares sequence identity with iraM from E

Common skin infection due to Panton–Valentine leucocidin-producing Staphylococcus aureus strains in asylum seekers from Eritrea: a genome-based investigation.

Bloodstream infections due to Peptoniphilus spp.: report of 15 cases

Phylogenetic tree. Phylogenetic tree. Shown are circle phylogram relationships for known genotypes of HRV-A, HRV-B, and HRV-C. The tree was calculated.

NP sequence alignment of human H1N1 strains and phylogenetic analysis of representative NP from pandemic and seasonal H1N1 strains. NP sequence alignment.

Phylogenetic and convergence analyses of rpoB mutations.

Core genome phylogeny of V. anguillarum strains.

Phylogenetic analyses of alphacoronaviruses based on complete genome and ORF1ab protein sequence. Phylogenetic analyses of alphacoronaviruses based on.

Genomic phylogeny reveals the long-term coexistence of diverse clades.

Phylogenetic tree of 38 Pseudomonas type strains, based on a concatenated nine-gene MLST analysis. Phylogenetic tree of 38 Pseudomonas type strains, based.

Transport by different Paenibacillus strains of Ampr E

Phylogenetic comparison among selected Pasteurella multocida and Haemophilus influenzae species with completed genome sequences. Phylogenetic comparison.

Assessment of plasmid lateral transfer between representative B

Phylogenetic tree of K. variicola from humans and animals.

Phylogenetic network with concatenated 16S rRNA, 23S rRNA, groEL, rpoB, and dnaK sequences (3,009 unambiguously aligned base pairs), including 71 Coxiella-like.

Phylogenetic analysis of AquK2P.

Phylogenetic analysis of K. quasipneumoniae subsp

Neighbor-joining tree of the 262 S

Neonatal HSV-2 genomes are genetically distinct from one another and encompass a broad range of known HSV-2 genetic diversity. Neonatal HSV-2 genomes are.

Target versatility. Target versatility. (A) Δctl0063, Δctl0064, Δctl0065, ΔtrpA, and wild-type C. trachomatis were analyzed by PCR with primers immediately.

Schematic representation of the progress in the development of vaccines against the most recent pandemic and seasonal H1N1 influenza virus strains. Schematic.

S protein sequence-based phylogenetic analyses of alphacoronaviruses.

(A) Bayesian phylogenetic tree of the H gene nucleotide alignment from tigers Pt2004 and Pt and representative CDV sequences obtained from GenBank.

Phylogenetic tree based on predominant 16S rRNA gene sequences obtained by C4–V8 Sutterella PCR from AUT-GI patients, Sutterella species isolates, and.

Presence of Sutterella sequences in a subset of AUT-GI patients.

LAIV enhances bacterial load and duration of staphylococcal carriage.

Effects of antibiotics on microbiome profiles of feces (A) and saliva (B) from the KI study and feces (C) and saliva (D) from the HP study. Effects of.

Protection is associated with trogocytosis but not phagocytosis of human cells. Protection is associated with trogocytosis but not phagocytosis of human.

Phylogenetic tree of Shigella, EIEC, and nonpathogenic E

Phylogenetic tree of the complete genomes of 27 representative human (black) and camel (red) MERS-CoV strains rooted by NeoCoV (KC ). Phylogenetic.

Swarming motility of A. hydrophila strains SSU, ATCC 7966T, E1, and E2

Venn diagram of the distribution of protein CDSs inferred from the genomes of A. hydrophila ATCC 7966T, E1, and E2. Venn diagram of the distribution of.

Phylogenetic analysis of complete Fusobacterium genomes.

Analysis of Fusobacterium nucleatum ATCC genomes compared to previous builds. Analysis of Fusobacterium nucleatum ATCC genomes compared to.

Genotypic and phenotypic characterization of yeast strains isolated from ancient vessels. Genotypic and phenotypic characterization of yeast strains isolated.

Overexpression of sRNA-29 changes the expression of 53 genes across the P. denitrificans genome. Overexpression of sRNA-29 changes the expression of 53.

Tree depicting the phylogenetic relationships of all strains included in this study. Tree depicting the phylogenetic relationships of all strains included.

Differences in the relative abundances of mycobacteria (as determined via 16S rRNA gene sequencing) across households in the United States on municipal.

Unrooted neighbor-joining tree of 16S rRNA gene sequences from low-G+C-content gram-positive bacteria, obtained from clone libraries. Unrooted neighbor-joining.

Most virus-related pyrosequencing reads found in raw sewage represent previously unknown viruses. Most virus-related pyrosequencing reads found in raw.

Percentage of papers containing inappropriate image duplications by year of publication. Percentage of papers containing inappropriate image duplications.

Effect of 1% (wt/vol) aqueous suspensions of KC on the viability of various ESKAPE strains. Effect of 1% (wt/vol) aqueous suspensions of KC on the viability.

Presentation transcript:

Phylogenetic tree of Leclercia spp Phylogenetic tree of Leclercia spp. based on core genome alignment (ParSNP v 1.2). Phylogenetic tree of Leclercia spp. based on core genome alignment (ParSNP v 1.2). The tree includes eight genomes from this study (LSNIH1 to -8), two publicly available environmental isolates (NCBI accession no. JWJV01 and MUFS01), and two L. adecarboxylata reference strains (ATCC 23216, USDA-ARS-USMARC-60222). Isolation sources are indicated in parentheses. Core genome alignments supporting this tree covered 36% of the reference sequence. Rebecca A. Weingarten et al. mBio 2018; doi:10.1128/mBio.02011-17