Iterative Phase Retrieval (Jianwei Miao & David Sayre)

Slides:



Advertisements
Similar presentations
Transmission Electron Microscopy (TEM)
Advertisements

Mikhail Rybin Euler School March-April 2004 Saint Petersburg State University, Ioffe Physico-Technical Institute Photonic Band Gap Structures.
Electron Diffraction - Introduction Electron diffraction is an important method to characterize materials. The textbook, Transmission Electron Microscopy,
Introduction to protein x-ray crystallography. Electromagnetic waves E- electromagnetic field strength A- amplitude  - angular velocity - frequency.
Ultrafast XUV Coherent Diffractive Imaging Xunyou GE, CEA Saclay Director : Hamed Merdji.
© Ceridwen, CC BY-SA Temporal focussing of ultrafast pulses through an opaque scattering medium David McCabe, AyhanTajalli, BéatriceChatel Laboratoire.
Imaging x-ray generation and Scattering Tabletop soft x-ray coherent imaging microscopes.
Fig A cubic crystal and two different families of crystal planes. The spacing of the planes in (a) is d = a (2) -1/2 (b) is d = a (3) -1/2 There.
Single Particle X-ray Diffraction - the Present and the Future John Miao Stanford Synchrotron Radiation Laboratory Stanford Linear Accelerator Center.
PHY 1371Dr. Jie Zou1 Chapter 38 Diffraction and Polarization.
TEM- What is it?. Diffraction in the Transmission Electron Microscope Vidhya Sagar Jayaseelan.
ERL & Coherent X-ray Applications
Hanging Drop Sitting Drop Microdialysis Crystallization Screening.
Introduction: Optical Microscopy and Diffraction Limit
Scattering Experiments
Stanford - SSRL: J. Lüning W. Schlotter H. C. Siegmann Y. Acremann...students Berlin - BESSY: S. Eisebitt M. Lörgen O. Hellwig W. Eberhardt Probing Magnetization.
Nanoparticle Polarizability Determination Using Coherent Confocal Microscopy Brynmor J. Davis and P. Scott Carney University of Illinois at Urbana-Champaign.
WELCOME.
Diffraction from point scatterers Wave: cos(kx +  t)Wave: cos(kx +  t) + cos(kx’ +  t) max min.
Phase Retrieval Applied to Asteroid Silhouette Characterization by Stellar Occultation Russell Trahan & David Hyland JPL Foundry Meeting – April 21, 2014.
Effective lens aperture Deff
CBED Patterns - Introduction
10/17/97Optical Diffraction Tomography1 A.J. Devaney Department of Electrical Engineering Northeastern University Boston, MA USA
Coherent X-ray Diffraction Workshop, BNL, May Keith A. Nugent ARC Centre of Excellence for Coherent X-ray Science & School of Physics The University.
Principal maxima become sharper Increases the contrast between the principal maxima and the subsidiary maxima GRATINGS: Why Add More Slits?
1 2. Focusing Microscopy Object placed close to secondary source: => strong magnification The smaller the focus, the sharper the image! Spectroscopy, tomography.
Digital two photon microscopy for multiple fast signals acquisition Laboratory of Advanced Biological Spectroscopy (L.A.B.S.) University of Milan - Bicocca.
I.A. Vartanyants, I.K. Robinson
Coherent X-ray Diffraction (CXD) X-ray imaging of non periodic objects Campi G., De Caro L., Giannini C., Guagliardi A., Margonelli A., Pifferi A.
Light of wavelength passes through a single slit of width a. The diffraction pattern is observed on a screen a distance x from the slit. Q double.
~ Crystallography ~ Prof. Yu Wang Office: A507 Telephone: ~
X RAY CRYSTALLOGRAPHY. WHY X-RAY? IN ORDER TO BE OBSERVED THE DIMENTIONS OF AN OBJECT MUST BE HALF OF THE LIGHT WAVELENGHT USED TO OBSERVE IT.
John Miao Stanford Synchrotron Radiation Laboratory Stanford Linear Accelerator Center Crystallography without Crystals and the Potential of Imaging Single.
What’s a modulated structure ?
Coherent X-ray Diffraction (CXD) X-ray imaging of non periodic objects Campi G., De Caro L., Giannini C., Guagliardi A., Margonelli A., Pifferi A.
The SPARX FEL Project a source for coherent radiation production in the soft X-ray energy range.
Chris Hall Monash Centre for Synchrotron Science Monash University, Melbourne, Australia.
1 Atomic Resolution Imaging of Carbon Nanotubes from Diffraction Intensities J.M. Zuo 1, I.A. Vartanyants 2, M. Gao 1, R. Zhang 3, L.A.Nagahara 3 1 Department.
Solving crystals structures from HREM by crystallographic image processing Xiaodong Zou Structural Chemistry, Stockholm University.
Pattersons The “third space” of crystallography. The “phase problem”
Atomic structure model
Low Angle X-ray Scattering (LAXS) for Tissue Characterization Dr M A Oghabian.
Coherent X-ray Diffraction (CXD) X-ray imaging of non periodic objects.
Fourier transform from r to k: Ã(k) =  A(r) e  i k r d 3 r Inverse FT from k to r: A(k) = (2  )  3  Ã(k) e +i k r d 3 k X-rays scatter off the charge.
Summer '07 at CLS Small Angle X-Ray Scattering Peter ChenChithra Karunakaran & Konstantine Kaznatcheev.
Coherent X-ray Diffraction (CXD) X-ray imaging of non periodic objects Campi G., De Caro L., Giannini C., Guagliardi A., Margonelli A., Pifferi A.
Frequency space, fourier transforms, and image analysis
Highlights of science of USR Yuhui Dong BSRF, IHEP, CAS 2012/10/29.
Coherent X-Ray Diffraction Imaging Kevin Raines University of California, Los Angeles Compton Sources for X/gamma Rays: Physics and Applications Alghero.
Electron Crystallographic Study of Incommensurate Modulated Structures
Fast Fourier transform of atomic resolution high-resolution transmission electron microscopy images of a polycrystalline area from a lysed cell deposit.
What’s a modulated structure ?
Experiment and Results
3.3 Other types of microscopy
Cryo-EM Services Electron microscopy (EM) has become an extremely popular method for the ultrastructural study of macromolecules, cells and tissues. An.
Cryo-em Electron microscopy (EM) has become an extremely popular method for the ultrastructural study of macromolecules, cells and tissues. An aqueous.
(A) Schematic description of working principle and detection scheme.
(A) SEM images of AuNPs with different diameter.
Q36.4 Coherent light passing through six (6) slits separated by a distance d produces a pattern of dark and bright areas on a distant screen. There will.
Diffraction Interference of waves creates a diffraction pattern.
A. Double the slit width a and double the wavelength l.
Fourier transform (see Cowley Sect. 2.2)
Diffraction T. Ishikawa Part 1 Kinematical Theory 1/11/2019 JASS02.
Complex Nanophotonics
Mitofilin is localized in individual clusters in the mitochondria of primary adult human fibroblasts. Mitofilin is localized in individual clusters in.
Electron microscopy confirms the exterior location of GFP on chimeric GFPcore particles. Electron microscopy confirms the exterior location of GFP on chimeric.
Volume 74, Issue 5, Pages (May 1998)
Fig. 1. E-cadherin localizes in nano-scale clusters.
Long-range structural order control of SS-annealed cylinder patterns
Presentation transcript:

Iterative Phase Retrieval (Jianwei Miao & David Sayre) Diffraction Pattern Fourier Transformation Phase Information is lost Compare with observed pattern Make diffraction pattern Iteration Reconstruction Fourier Transformation with assumed phase You need not to make crystal

Reconstruction of Complex Real Space Images Phase Retrieval Scattered Intensity

3D Diffraction Nanoscopy Miao et al. PRL (2002) 8 nm resolution Two Layer Ni Pattern Coherent Scattering Pattern SEM image of Ni pattern on SiN 2D Reconstructed Image (<10 nm resolution) 3D Reconstructed Image (~50 nm resolution)

E. Coli Bacteria Reconstructed Image Coherent Scattering Pattern 25 nm resolution J. Miao, et al.: PNAS, 100 (2003) 110-112 Visible, Confocal Microscopy