Introduction Methods Expected outcomes Conclusions

Slides:



Advertisements
Similar presentations
Bacterial diversity of field-caught mosquitoes from different regions of Belgium and potential impact on virus transmission Raharimalala F.N. 1, 2, Boukraa.
Advertisements

DIFFERENTIAL DIAGNOSIS OF AFRICAN SWINE FEVER IN SUSPECTED OUTBREAK SAMPLES IN DOMESTIC PIGS IN WESTERN KENYA USING MOLECULAR TOOLS Obange F.A 1, Okoth.
Differential insertion of transposable elements in Anopheles gambiae M & S genomes Jenica L. Abrudan, Ryan C. Kennedy, Maria F. Unger, Michael R. Olson,
YAA Reuben Mangi (I56/ 81536/ 2012) Bsc. University of Nairobi (2012)
Biotechnology: How Do We Use What We Know about Life?
Bioinformatics Student host Chris Johnston Speaker Dr Kate McCain.
Bacterial Physiology (Micr430)
Eastern Africa Barcode Workshop, Oct DNA Barcoding - Parasites and Vectors Dan Masiga Molecular Biology and Biotechnology Department.
DNA in classifying species. Traditional classification Classification of organisms into closely related species, then more distant genuses, phyla and.
Biotechnology Chapter 6.
 What is a genome?  A genome is an organism’s full collection of genes.  Why do cells need to control gene expression?  Cells need to control gene.
The 4 th International Glossina Genomics Initiative (IGGI) Meeting, Welcome Trust Genome Campus, Cambridge, UK, 15 – 16 December 2006 POPULATION GENETIC.
H UMAN PAPILLOMAVIRUS AND BREAST CANCER Giles Davies An update on research progress.
Biotechnology. Comparative genomics also has been used to identify recently mobilized transposons in genetically diverse humans. For example, over 600.
AP Biology Ch. 20 Biotechnology.
Biotechnology SB2.f – Examine the use of DNA technology in forensics, medicine and agriculture.
Background  The soft shell clam, Mya arenaria, currently occupies a large geographical range in the northern hemisphere.  Soft shell clams are found.
DNA FINGERPRINTS. No two people in the world have the same DNA (except Identical twins) A majority of DNA is actually the same for all humans. About 0.10.
Section 2 Genetics and Biotechnology DNA Technology
Finish up array applications Move on to proteomics Protein microarrays.
FISH SPECIES IDENTIFICATION AND BIODIVERSIFICATION IN ENUGU METROPOLIS RIVER BY DNA BACODING PRESENTED BY Chioma Nwakanma (PhD) Michael Okpara University.
Biotechnology. Polymerase Chain Reaction PCR is the cloning of DNA (amplification). Copies are made and the amount of DNA can be rapidly increased. Useful.
Researchers use genetic engineering to manipulate DNA. Section 2: DNA Technology K What I Know W What I Want to Find Out L What I Learned.
DNA Technology Chapter 13 Lab Biology Genetically Modified Organisms Modified genome of an organism ▫Takes DNA from multiple sources and combine them.
MOLECULAR ANALYSIS OF THE 2 ND FRAGMENT OF THE CINNABAR GENE IN DROSOPHILA MELANOGASTER.
KEY CONCEPT Biotechnology relies on cutting DNA at specific places.
Human Genomics. Writing in RED indicates the SQA outcomes. Writing in BLACK explains these outcomes in depth.
Overview and History of VectorBase Frank Collins March 31, 2015.
Unit 1 – Living Cells.  The study of the human genome  - involves sequencing DNA nucleotides  - and relating this to gene functions  In 2003, the.
Higher Human Biology Unit 1 Human Cells KEY AREA 5: Human Genomics.
KEY CONCEPT DNA sequences of organisms can be changed.
Assessing Vulnerability of Maasai Communities in Tanzania to African Trypanosomiais Paul Gwakisa.
1. Temporal and spatial variations of tsetse flies and trypanosomes allows simulation of these parameters for future prediction of disease dynamics; 2.
From the double helix to the genome
Mahmuda Akter, Paige Fairrow-Davis, and Rebecca Seipelt-Thiemann
Biotechnology.
Introduction Conclusion References Aim of the work
Noyes HA1 Agaba M2 Gibson J3 Ogugo M2 Iraqi F2 Brass A4 Anderson S5
Computational Evaluation of 22 identified malaria Drug targets
Whole Genome Sequencing of Brucella melitensis Isolates for the Identification of Biovar, Variants and Relationship within a Biovar *Shaheed F [1], Habibi.
Human African Trypanosomiasis (HAT): Not Something to Sleep On
The bacterial ecology of the sheep mammary gland
Microsatellite identification via ISSR Protocol:
Tejaswini Katravulapalli BNFO 300
3.5 Genetic modification and biotechnology
DIFFERENTIAL DIAGNOSIS OF AFRICAN SWINE FEVER IN SUSPECTED OUTBREAK SAMPLES IN DOMESTIC PIGS IN WESTERN KENYA USING MOLECULAR TOOLS Obange F.A1, Okoth.
The African Soil Microbiology project
Section 2 Genetics and Biotechnology DNA Technology
Gene-sequence analysis reveals at least three species hidden in Zausodes arenicolus Erin Easton November 13, 2008.
3.5 – Genetic Modification & Biotechnology
Detection of genetically modified plants By: Ehsan Zayerzadeh Standard Research Institute
Manipulating DNA Chapter 9
Scientists use several techniques to manipulate DNA.
Characterizing Spiroplasma from Wild-caught Mosquitos in Kenya and Examining their Potential for Inhibiting Vector-borne Disease Transmission Towett Sharon1.
The student is expected to: (6H) describe how techniques such as DNA fingerprinting, genetic modifications, and chromosomal analysis are used to study.
Biotechnology.
The characterisation of mtDNA deletions using long-read sequencing
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
3.1 Genes Genes and hence genetic information is inherited from parents, but the combination of genes inherited from parents by each offspring will be.
Control of tsetse Trypanosome Disease in African Country
Trypanosomes We will discuss two groups.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
NOTICE MSc. PROJECT PROPOSAL PRESENTATIONS
ROLE OF KEPHIS IN SAFE HANDLING, TRANSFER AND USE OF GMOS.
3.1 Genes Genes and hence genetic information is inherited from parents, but the combination of genes inherited from parents by each offspring will be.
NOTICE MSc. PROJECT PROPOSAL PRESENTATIONS
The genome Coding regions
3.5 – Genetic Modification & Biotechnology
Restriction Fragment Length Polymorphism (RFLP)
GENE TECHNOLOGY Chapter 13.
Presentation transcript:

Introduction Methods Expected outcomes Conclusions IDENTIFICATION AND CHARACTERISATION OF ACCESSORY GLANDS IN THE GLOSSINA GENUS Muna.F.Abry1 ,Daniel Masiga2 ,Benard Kulohoma1,2 1) University of Nairobi 2) International centre for insect physiology and ecology (ICIPE) There is a high level of genetic diversity at the ACP gene locus in the Glossina species. Introduction Accessory gland proteins (ACPs) are reproductive proteins produced by the male accessory glands (MAGS) of most insect species. These proteins are essential for male fertility and play a major role in regulating female reproductive physiology and oviposition .ACPs therefore present attractive potential candidates for biological and genetic control of insect pests. Currently, there is limited information on the identity and organization of ACPs in the sequence of the recently sequenced Glossina genus genomes. This study aims to identify the presence of ACPs in the four publicly available genomes of the Glossina (tsetse fly) insect species and from prospectively collected samples in East Africa. The tsetse fly is the principal vector of the parasite that causes Human African Trypanosomiasis (HAT) and cattle Nagana. Over 60 million people and 80 million cattle are at risk of contracting disease in sub-Saharan Africa. We exploit the availability of Glossina genomes to explore the plausibility of ACPs as targets against successful reproduction, and therefore vectorial capacity as control strategies for disease management. Our study will exploit state of the art bioinformatics approaches to assess the Acps sequence similarity in four Glossina species specifically: G.austeni ,G.brevipalpis, G.fuscipes and G.pallidipes against those that are well characterized in Drosophila and Anopheles genomes. Adapted from publichealth.yale.edu Hypothesis and Objectives H0 :There is a high level of genetic diversity at the ACP gene locus in the Glossina species. Objectives: Identify presence of ACP genes in the available Glossina genomes. Compare the genetic diversity between Glossina ACP homologs to those identified in the Drosophila and Anopheles genomes.   Adapted from lookfordiagnosis.com Methods The wet laboratory research will be carried out at the International Center of Insect Phsiology and Ecology (ICIPE) insilico ACP detection will be conducted at the University of Nairobi’s Center for Biotechnology and Bioinformatics (CEBIB) Study site Publicly available genomes of G. austeni, G. morsitans, G. pallidipes, G.fuscipes and G. brevipalpis from Vectorbase (www.vectorbase.org) will be used ACP domains will be identified against those of Drosophila and Anopheles ACP homologs(Dottorini et al., 2007) using HMMER version 3.0. Datasets and analysis DNA will be extracted using QIAGEN kit according to the manufacturer’s instructions from 50 tsetse samples (10 from each species: G.austeni, G. pallidipes, G.fuscipes and G.brevipalpis) . DNA extraction Development of the tsetse’s ACP primers will be conducted to screening of samples Ultra Violet illuminator will be used to view the presence of ACP genes across the forementioned tsetse fly species PCR analysis and gel electrophoresis Expected outcomes Acps are rapidly evolving genes not only in the Drosophila and Anopheles genomes but also in the Glossina genus explaining their high divergence across outgroup species. Conclusions A vector control strategy for the tsetse fly is essential to human and cattle health as well as to agricultural productivity. Male accessory glands secretions that include ACP tend to induce the reduction of female lifespan rendering them important candidates for the biological and genetic control of insect pests including the tsetse fly. CENTRE FOR BIOTECHNOLOGY AND BIOINFORMATICS (CEBIB), UNIVERISTY OF NAIROBI