Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.

Slides:



Advertisements
Similar presentations
Taxonomic composition of subway microbial communities.
Advertisements

Diversity of plants in a diet.
Exploration of the data set with age as a continuous variable.
Changes in archaeal diversity during great ape diversification.
Relative abundances of the top 10 most abundant OTUs across all fish samples are shown along with the data from the probiotic B. pumilus RI06-95 (OTU 3673)
Microbial diversity was broadly compared across three unique built-environment study sites for 16S rRNA amplicon and shotgun metagenome sequencing. Microbial.
Dysbiosis of gut microbiota patterns in Chinese patients with IBD
Gut microbial diversity of mice in voluntary and forced exercise groups. Gut microbial diversity of mice in voluntary and forced exercise groups. Weighted.
Microbial diversity of the 10 body locations sampled.
Optimized KatharoSeq protocol applied to a JPL cleanroom facility.
Fluoride affects stool-derived taxa found in the oral cavity.
Putative MBTA microbial community sources.
Plots of the number of sequences [log (x + 1) scale] from bacterial OTUs in both PCR replicates (PCR1 and PCR2) of the 348 wild rodents analyzed in the.
A small number of bacteria showed high levels of growth in the storage studies. A small number of bacteria showed high levels of growth in the storage.
Nonmetric multidimensional scaling (NMDS) plots of fecal and biopsy sample-based Bray-Curtis distances computed from the relative abundances of the 258.
(a) Correspondence analysis of 88 soil samples.
Bacteroidetes bacteria are the main contributors to LPS biosynthesis in the human gut microbiome. Bacteroidetes bacteria are the main contributors to LPS.
C. Kampmann, J. Dicksved, L. Engstrand, H. Rautelin 
Differences in microbiome between control and BPA-exposed rabbit offspring and dams according to linear discriminant analysis effect size (LEfSe). Differences.
Performance of FDR methods on filtered microbiome data.
Distribution of the bacterial taxa that exhibit the greatest log fold changes in mean relative abundance. Distribution of the bacterial taxa that exhibit.
Gut Microbiota and Extreme Longevity
Distributions of pairwise correlation coefficients from cooccurrence models computed from temporal data (fecal) and spatial data (biopsy samples; means.
Unweighted UniFrac PCoA plots.
Heatmaps of differential OTUs
Bacterial community dissimilarity, as measured by weighted UniFrac, a quantitative measurement (a), and unweighted UniFrac, a qualitative measurement (b),
The similar shifts of gut microbiota in IBD across cohorts.
Enterotypes of the distal gut microbial profiles.
ncRNAs are developmentally regulated as well as mRNAs.
Comparison of the original ITS primer pair and the new, modified ITS primer pair. Comparison of the original ITS primer pair and the new, modified ITS.
Comparison of the modified 515f/806rB V4 primer pair and the 515f (modified)/926r primer pair. Comparison of the modified 515f/806rB V4 primer pair and.
Diagram of experimental design.
Correlations between metabolic pathway abundances and environmental conditions deduced from the ocean samples in this study, at various levels of model.
Aboveground and belowground samples showed differences in their bacterial community structures and compositions, while bulk soil and root communities differed.
Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.
Compositional PCA plot of samples (A) and OTU loadings (B) for the initial data set. Compositional PCA plot of samples (A) and OTU loadings (B) for the.
Exploration of gut and skin microbiome of the habitat switching experiment with Calour. Exploration of gut and skin microbiome of the habitat switching.
Co-occurrence network in tongue microbiota of 506 elderly adults built from SparCC correlation coefficients between sequence abundances. Co-occurrence.
(A) Box-and-whisker plots illustrate the median, maximum, minimum, and first and third quartiles of the distribution of the number of observed OTUs and.
Belowground microbiome community responses.
Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.
Microbial composition of mother and infant samples and shared bacteria within mother-infant pairs. Microbial composition of mother and infant samples and.
Microbial communities of the differently treated mice with lupus cluster separately after treatment. Microbial communities of the differently treated mice.
Fig. 2 Ro60 commensal bacteria are common among lupus and healthy subjects without overt dysbiosis of the fecal, oral, or skin microbiome. Ro60 commensal.
Benchmarks of OTU picking tools on artificial communities.
(a) A band table where the y axis data represent individual OTUs and the x axis data represent samples. (a) A band table where the y axis data represent.
Relationship between relative abundance and transcription/abundance ratio (logarithmic scales) of OTUs (brown), ZOTUs (turquoise), and population genomes.
(A and B) Unweighted (A) and weighted (B) UniFrac clustering of three 16S rRNA hypervariable regions using fragment insertion SATé-enabled phylogenetic.
Diversity of whale blow and seawater samples from minimum entropy decomposition (MED) node groupings (17), including observed number of MEDs, a relative.
Cyanophage-host interactions from metatranscriptomic data.
A principal-coordinate analysis plot of UniFrac distances from Deblur as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.
Comparison of levels of microbiome diversity by BMI, stratified by geography. Comparison of levels of microbiome diversity by BMI, stratified by geography.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
Plot of relative abundance of Bifidobacterium animalis (A), Ruminococcus (Ruminococcaceae) (B), and Succinivibrio (Succinivibrionaceae) (C) (repeated-measures.
Comparison of the original 515f/806r primer pair and the new, modified 515f/806rB primer pair. Comparison of the original 515f/806r primer pair and the.
Comparison of gut microbiota alpha diversity in different preservatives based on 16S rRNA gene V3-V4 amplicon sequencing. Comparison of gut microbiota.
by Peter J. Turnbaugh, Vanessa K. Ridaura, Jeremiah J
PCoA plots of subgingival samples with disease classification overlaid
Relative abundance of the predicted KEGG orthologous groups (KOs) in the fecal (A) and salivary (B) samples from the clindamycin group plotted against.
Comparison of baseline microbiome profiles from both types of samples, saliva and feces (A), and per sample type, feces (B) and saliva (C), by study site,
Effects of antibiotics on microbiome profiles of feces (A) and saliva (B) from the KI study and feces (C) and saliva (D) from the HP study. Effects of.
(A) Principal component analysis plot of weighted UniFrac distances of microbiota composition at baseline, week 2 and week 8 and donors. (A) Principal.
Host gene expression changes following exposure to the microbiota.
Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.
Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.
Comparison of distal gut microbiota composition between Egyptian and U
Northern shovelers may have unique microbiome differences with respect to IAV infection, relative to the other duck species. Northern shovelers may have.
Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.
Higher sub-OTU resolution, in combination with SEPP phylogenies, exposed relevant ecological signals. Higher sub-OTU resolution, in combination with SEPP.
Infant skin and oral mycobiomes by birth mode.
Presentation transcript:

Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives and under different temperature treatments. (a) Box plots show comparisons of weighted UniFrac distances between time points within each preservation type, within each individual, and across temperature treatments. Horizontal lines show the average difference in diversity between replicate samples (lowest line, light tan), between different dogs (next line up, tan), between human individuals (next line up in dark tan), and between dogs and humans (highest line, brown). Colors represent the different temperatures at which samples were stored. “−20C after 1wk” represents samples that were stored at −20°C following 1 week of storage at ambient temperature. 70etoh and 95etoh, 70% and 95% ethanol, respectively. (b to f) Scatterplots show the relative abundance (percentage) of each OTU found in the freshly collected sample placed in a given preservative, plotted against its relative abundance in the same preservative after 8 weeks, for each temperature manipulation, except in panel b, where the “None” plot shows the comparison between samples frozen for 1 week and samples frozen for 8 weeks. Colors correspond to different individuals. Correlation coefficients for each plot are shown in parentheses. Se Jin Song et al. mSystems 2016; doi:10.1128/mSystems.00021-16