Penalized designs of multi-response experiments

Slides:



Advertisements
Similar presentations
Vanderbilt University Medical Center SRC Presentation Vincent Kokouvi Agboto Assistant Professor/Director of Biostatistics, Meharry Medical College Assistant.
Advertisements

Treatment Effect Heterogeneity & Dynamic Treatment Regime Development S.A. Murphy.
Sample size optimization in BA and BE trials using a Bayesian decision theoretic framework Paul Meyvisch – An Vandebosch BAYES London 13 June 2014.
Exact Logistic Regression Larry Cook. Outline Review the logistic regression model Explore an example where model assumptions fail –Brief algebraic interlude.
Impact of Dose Selection Strategies on the Probability of Success in the Phase III Zoran Antonijevic Senior Director Strategic Development, Biostatistics.
An Experimental Paradigm for Developing Dynamic Treatment Regimes S.A. Murphy Univ. of Michigan March, 2004.
Constructing Dynamic Treatment Regimes & STAR*D S.A. Murphy ICSA June 2008.
Hypothesis Testing and Dynamic Treatment Regimes S.A. Murphy Schering-Plough Workshop May 2007 TexPoint fonts used in EMF. Read the TexPoint manual before.
An Experimental Paradigm for Developing Adaptive Treatment Strategies S.A. Murphy Univ. of Michigan UNC: November, 2003.
Descriptive statistics Experiment  Data  Sample Statistics Experiment  Data  Sample Statistics Sample mean Sample mean Sample variance Sample variance.
Variable Selection for Tailoring Treatment
An Experimental Paradigm for Developing Adaptive Treatment Strategies S.A. Murphy Univ. of Michigan February, 2004.
July 3, A36 Theory of Statistics Course within the Master’s program in Statistics and Data mining Fall semester 2011.
BS704 Class 7 Hypothesis Testing Procedures
Bayesian Analysis of Dose-Response Calibration Curves Bahman Shafii William J. Price Statistical Programs College of Agricultural and Life Sciences University.
1 Variable Selection for Tailoring Treatment S.A. Murphy, L. Gunter & J. Zhu May 29, 2008.
Nonlinear Stochastic Programming by the Monte-Carlo method Lecture 4 Leonidas Sakalauskas Institute of Mathematics and Informatics Vilnius, Lithuania EURO.
Re-Examination of the Design of Early Clinical Trials for Molecularly Targeted Drugs Richard Simon, D.Sc. National Cancer Institute linus.nci.nih.gov/brb.
Adaptive Designs for Clinical Trials
Prospective Subset Analysis in Therapeutic Vaccine Studies Richard Simon, D.Sc. Chief, Biometric Research Branch National Cancer Institute
1 Regression Models with Binary Response Regression: “Regression is a process in which we estimate one variable on the basis of one or more other variables.”
Bayesian Statistics in Clinical Trials Case Studies: Agenda
1 G Lect 11W Logistic Regression Review Maximum Likelihood Estimates Probit Regression and Example Model Fit G Multiple Regression Week 11.
Acute ischemic stroke (AIS) AISbrain artery Acute ischemic stroke (AIS) is a major cause of disability and death in adults. AIS is caused by a clot in.
Dose-Finding with Two Agents in Phase I Oncology Trials Thall, Millikan, Mueller & Lee, Biometrics, 2003.
“Simple” CRMs for ordinal and multivariate outcomes Elizabeth Garrett-Mayer, PhD Emily Van Meter Hollings Cancer Center Medical University of South Carolina.
Sequential, Multiple Assignment, Randomized Trials and Treatment Policies S.A. Murphy MUCMD, 08/10/12 TexPoint fonts used in EMF. Read the TexPoint manual.
How much can we adapt? An EORTC perspective Saskia Litière EORTC - Biostatistician.
Stochastic Linear Programming by Series of Monte-Carlo Estimators Leonidas SAKALAUSKAS Institute of Mathematics&Informatics Vilnius, Lithuania
7-1 Introduction The field of statistical inference consists of those methods used to make decisions or to draw conclusions about a population. These.
Logistic and Nonlinear Regression Logistic Regression - Dichotomous Response variable and numeric and/or categorical explanatory variable(s) –Goal: Model.
Empirical Efficiency Maximization: Locally Efficient Covariate Adjustment in Randomized Experiments Daniel B. Rubin Joint work with Mark J. van der Laan.
Cancer Trials. Reading instructions 6.1: Introduction 6.2: General Considerations - read 6.3: Single stage phase I designs - read 6.4: Two stage phase.
STONYBROOK1 Controlled Optimal Designs for Dose Response Studies ---- and a Website for Optimal Designs Xiangfeng Wu 1, Wei Zhu 1, Holger Dette 2, Weng.
I) AIC, ORIC and New method use information criteria and select the models with the largest adjusted log-likelihood. ii) MCT defines different contrasts.
BCS547 Neural Decoding.
CHAPTER 17 O PTIMAL D ESIGN FOR E XPERIMENTAL I NPUTS Organization of chapter in ISSO –Background Motivation Finite sample and asymptotic (continuous)
Bayesian Approach For Clinical Trials Mark Chang, Ph.D. Executive Director Biostatistics and Data management AMAG Pharmaceuticals Inc.
Bayesian Model Robust and Model Discrimination Designs William Li Operations and Management Science Department University of Minnesota (joint work with.
Motivation Using SMART research designs to improve individualized treatments Alena Scott 1, Janet Levy 3, and Susan Murphy 1,2 Institute for Social Research.
A shared random effects transition model for longitudinal count data with informative missingness Jinhui Li Joint work with Yingnian Wu, Xiaowei Yang.
MPS/MSc in StatisticsAdaptive & Bayesian - Lect 71 Lecture 7 Bayesian methods: a refresher 7.1 Principles of the Bayesian approach 7.2 The beta distribution.
Designing Factorial Experiments with Binary Response Tel-Aviv University Faculty of Exact Sciences Department of Statistics and Operations Research Hovav.
ALISON BOWLING MAXIMUM LIKELIHOOD. GENERAL LINEAR MODEL.
John W. Tukey’s Multiple Contributions to Statistics at Merck Joseph F. Heyse Merck Research Laboratories Third International Conference on Multiple Comparisons.
1. Objectives Novartis is developing a new triple fixed-dose combination product. As part of the clinical pharmacology program, pharmacokinetic (PK) drug-drug.
| 1 Application of a Bayesian strategy for monitoring multiple outcomes in early oncology clinical trials Application of a Bayesian strategy for monitoring.
Lecture 1.31 Criteria for optimal reception of radio signals.
Bayesian-based decision making in early oncology clinical trials
Advanced Higher Statistics
CLINICAL PROTOCOL DEVELOPMENT
7-1 Introduction The field of statistical inference consists of those methods used to make decisions or to draw conclusions about a population. These.
Generalized Linear Models
Strategies for Implementing Flexible Clinical Trials Jerald S. Schindler, Dr.P.H. Cytel Pharmaceutical Research Services 2006 FDA/Industry Statistics Workshop.
A practical trial design for optimising treatment duration
Elaine M Pascoe, Darsy Darssan, Liza A Vergara
Dose-finding designs incorporating toxicity data from multiple treatment cycles and continuous efficacy outcome Sumithra J. Mandrekar Mayo Clinic Invited.
Statistics for the Social Sciences
DOSE SPACING IN EARLY DOSE RESPONSE CLINICAL TRIAL DESIGNS
Categorical Data Analysis
Covering Principle to Address Multiplicity in Hypothesis Testing
CS639: Data Management for Data Science
Tobias Mielke QS Consulting Janssen Pharmaceuticals
Optimal Basket Designs for Efficacy Screening with Cherry-Picking
Extensions of the TEQR and mTPI designs including non-monotone efficacy in addition to toxicity in dose selection Revathi Ananthakrishnan The 3rd Stat4Onc.
Hui Quan, Yi Xu, Yixin Chen, Lei Gao and Xun Chen Sanofi June 28, 2019
Björn Bornkamp, Georgina Bermann
Considerations for the use of multiple imputation in a noninferiority trial setting Kimberly Walters, Jie Zhou, Janet Wittes, Lisa Weissfeld Joint Statistical.
Quantitative Decision Making (QDM) in Phase I/II studies
Hong Zhang, Judong Shen & Devan V. Mehrotra
Presentation transcript:

Penalized designs of multi-response experiments Valerii Fedorov Acknowledgements: Yuehui Wu GlaxoSmithKline, Research Statistics Unit

Outline IR approach Reminder Model Information, utility functions, criteria Design Analysis of scenarios

IR approach: recycling of ideas

Observations and penalty Reminder Observations and penalty

Likelihood and information matrix Reminder Likelihood and information matrix

Cost constrained design Reminder Cost constrained design

Reminder Design transform

Reminder Equivalence theorem

Reminder First order algorithm

Reminder Adaptive design

Model Binary observations

Two drugs: typical responses Model Two drugs: typical responses

Model Probit model

More about probit model can be found in:

Diagram from Pearson’s paper

Linear predictor Model In what follows  = {-1.26, 2.0, 0.9, 14.8; -1.13, 0.94, 0.36, 4} ,  = 0.5

Information Information Matrix for a Single Observation or What Can be Learned from One Patient

Model 2D Penalty function Penalty = { Probability of efficacy} – 1  {Probability of no toxicity} – 1.

Utility and optimality criterion Utility (or what we want): Probability of efficacy without toxicity, i.e. p10(x) Distance from desirability point:  (x*) All unknown parameters Optimality criteria: Var {estimated p10(x)} Var {estimated max[p10(x)]} + Var {estimated location of max[p10(x)]} Var {estimated x*} Var {estimated  }

Utility - I Utility and optimality criterion arg max p10(x,) ={ 0.18, 0.68 }

Utility and optimality criterion Utility - II

Analysis of scenarios Design scenarios 91 subjects were assigned to three doses per drug in initial design (7 support points) Another 90 subjects to be assigned Total sample size: 181

Penalized locally D-optimal Analysis of scenarios Penalized locally D-optimal

Penalized composite locally D-optimal Analysis of scenarios Penalized composite locally D-optimal Initial design Added design points

Design comparison for D-criterion initial design included Analysis of scenarios Design comparison for D-criterion initial design included Design type Information per patient Penalty per patient Information per penalty u. Locally D-optimal 1 2.07 0.48 Penalized locally optimal 0.79 Penalized composite locally optimal 0.77 1.23 0.62 Penalized composite (median, 500) 0.70 1.36 0.52 Penalized adaptive (median, 500) 0.75 1.50 0.50 “Do your best” adaptive (median, 500) 0.46 1.19 0.39 Restricted “Uniform ” , 12 points 0.67 1.34

Simulation results (500 runs): the estimated best combination Analysis of scenarios Simulation results (500 runs): the estimated best combination Composite D-optimal Adaptive D-optimal Best dose Do your best

Simulation results (500 runs): the estimated best response Analysis of scenarios Simulation results (500 runs): the estimated best response Composite D-adaptive Do your best

CONCLUSIONS Recycling helps Select carefully whom you collaborate with

References I [1] Box, G.E.P. and Hunter, W.G. (1963). Sequential design of experiments for nonlinear models. In "Proceedings of IBM Scientic Computing Symposium (Statistics)". 113-137. [2] Cook, D. and Fedorov, V. (1995). Constrained optimization of experimental design. Statistics 26: 129-178. [3] Dragalin, V. and Fedorov, V. (2006) Adaptive model-based designs for dose-finding studies. JSPI, 136, 1800-1823. Dragalin, V., Fedorov, V., and Wu, Y. (2006). Optimal Designs for Bivariate Probit Model. GSK Technical Report 2006-01. http://www.biometrics.com/8D97129158B901878025714D00389BEB.html Dragalin, V., Fedorov, V., and Wu, Y. (2007) . Adaptive designs for selecting drug combinations based on efficacy-toxicity responses. JSPI, early view. [4] Fan, S.K. and Chaloner, K. (2001). Optimal designs for a continuation-ratio model. In MODA 6 Advances in Model-Oriented Design and Analysis. A.Atkinson, P.Hackl, and W.G.Müller (eds), 77-85. Heidelberg: Physica-Verlag. [6] Fedorov, V.V. and Atkinson, A.C. (1988). The optimum design of experiments in the presence of uncontrolled variability and prior information. In Optimal Design and Analysis of Experiments. Eds. Dodge Y., Fedorov V.V. and Wynn H.P. New York: North-Holland. pp 327- 344. [7] Fedorov, V.V. and Hackl, P. (1997). Model-Oriented Design of Experiments. Lecture Notes in Statistics, pp.125. Springer. [8] Fedorov, V., Gagnon, R., Leonov, S., Wu, Y. (2007). Optimal design of experiments in pharmaceutical applications. In: Dmitrienko, A. et al. (eds), Pharmaceutical Statistics, SAS Press. [9] Fedorov V, Wu Y. (2007). Generalized probit model in design of dose finding experiments. In: Lopez-Fidalgo J, Rodriguez-Diaz JM, Torsney B (Eds), mODa 8 – Advances in Model-Oriented Design and Analysis, Physica-Verlag, 67–74.

References II [10] Ford, I., Titterington, D.M. and Wu, C.F.J. (1985). Inference and sequential design. Biometrika 72: 545-551. [11] Heise, M.A. and Myers, R.H. (1996). Optimal designs for bivariate logistic regression. Biometrics 52: 613-624. [13] Hu, I. (1998). On sequential designs in nonlinear problems. Biometrika 85: 446-503. [14] Hu, F. and Rosenberger, W. (2006), The theory of response-adaptive randomization in clinical trials, Wiley. [15] Murtaugh, P.A. and Fisher, L.D. (1990). Bivariate binary models of efficacy and toxicity in dose-ranging trials. Commun. Statist. {Theory Meth.} 19: 2003-2020. [16] O'Quigley, J., Hughes, M., and Fenton, T. (2001). Dose finding designs for HIV studies. Biometrics 57: 1018 -1029. [17] Rabie, H.S. and Flournoy, N. (2004). Optimal designs for contingent response models. In MODA 7 | Advances in Model-Oriented Design and Analysis. A. Di Bucchianico, H. Läuter and H.P. Wynn (eds), 133-142. Heidelberg: Physica-Verlag. [18] Thall, P. and Russell, K. (1998). A strategy for dose-finding and safety monitoring based on efficacy and adverse outcomes in phase I/II clinical trials. Biometrics 54: 251-264. [19] Whitehead, J. and Williamson, D. (1998). An evaluation of Bayesian decision procedures for dose-finding studies. J. Biopharma.Stat. 8: 445-467. [20] Ying, Z. and Wu, C.F.J. (1997). An asymptotical theory of sequential designs based on maximum likelihood recursions. Statistica Sinica 7: 75-91.

Estimation of the best dose with and without dichotomization I Model Estimation of the best dose with and without dichotomization I Dichotomized Continuous

Estimation of the best dose with and without dichotomization II Model Estimation of the best dose with and without dichotomization II

2D binary Model Responders without toxicity - Responders with toxicity Non-responders without toxicity Non-responders with toxicity