PlantcircBase: A Database for Plant Circular RNAs

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PlantcircBase: A Database for Plant Circular RNAs Qinjie Chu, Xingchen Zhang, Xintian Zhu, Chen Liu, Lingfeng Mao, Chuyu Ye, Qian-Hao Zhu, Longjiang Fan Molecular Plant Volume 10, Issue 8, Pages 1126-1128 (August 2017) DOI: 10.1016/j.molp.2017.03.003 Copyright © 2017 The Author Terms and Conditions

Figure 1 Summary and Functions of PlantcircBase. (A) Summary of circRNAs from the five plant organisms in PlantcircBase. (B) Home page of PlantcircBase. (C) An example entry of circRNA (ath_circ_025680) in PlantcircBase (Supplemental Figure 1). (D) Search page of PlantcircBase, which can be searched using keywords, subset information, and sequences. (E) Visualization of a circRNA (osa_circ_026780, whose position in the genome is Chr5: 3768053-3768717). The top and bottom panels show the circular and the linear format of a circRNA, respectively. Different genomic components (CDS, intron, exon, and UTR) are color coded. The arrow line represents the direction of transcripts. The vertical bar with two flanking numbers represents the back-splicing site of the circRNA. (F) Visualization of the parent gene of a circRNA (osa_circ_026780). The gray area represents the exact position of the circRNA within its parent gene. Molecular Plant 2017 10, 1126-1128DOI: (10.1016/j.molp.2017.03.003) Copyright © 2017 The Author Terms and Conditions