(A and B) Relative (A) and mean (B) abundances of reference viral genomes across the continuum summarized by host type. (A and B) Relative (A) and mean.

Slides:

Advertisements

Similar presentations

Ishida et al. Supplementary Figures 1-3 Page 1 Supplementary Fig. 1. Stepwise determination of genomic aberrations on chr-13 in medulloblastomas from Ptch1.

Advertisements

Landscape overview of GENIE dataset.

Exploration of the data set with age as a continuous variable.

Volume 138, Issue 4, Pages (August 2009)

Genomic rearrangements of E

Alterations in the Gut Microbiota Associated with HIV-1 Infection

Gene-Expression Variation Within and Among Human Populations

Cell sorting scheme and its impact on bacterial diversity of the samples. Cell sorting scheme and its impact on bacterial diversity of the samples. (A)

Patterns of Somatically Acquired Amplifications and Deletions in Apparently Normal Tissues of Ovarian Cancer Patients Leila Aghili, Jasmine Foo, James.

Volume 22, Issue 3, Pages e5 (September 2017)

Mapping Global Histone Acetylation Patterns to Gene Expression

Fold change differences for each bacterial genus in the two fraction pairs. Fold change differences for each bacterial genus in the two fraction pairs.

Size profile of viral small RNAs obtained from control cells and RIG-I- and MDA5-deficient (KO) cells after infection for 24 h with SINV at an MOI of 0.1,

Performance of FDR methods on filtered microbiome data.

Distribution of the bacterial taxa that exhibit the greatest log fold changes in mean relative abundance. Distribution of the bacterial taxa that exhibit.

Enrichment of members of KEGG Orthology (KOs) families across MBTA surfaces before and after P. acnes removal. Enrichment of members of KEGG Orthology.

Parallel evolution of coding sequences above neutral expectation.

Family level bar plots generated in QIIME 1. 9

Positions of LSUCC isolates relative to matching OTUs within the top 60 ranks for the most successful experiment, CJ2, which is enlarged to allow for OTU.

Differential relative abundance of major taxa for successive pairwise comparisons. Differential relative abundance of major taxa for successive pairwise.

Enterotypes of the distal gut microbial profiles.

ncRNAs are developmentally regulated as well as mRNAs.

Growth of L. monocytogenes strains AL4E, AT3E, and 10403S, derivative cured strain AT3Epc, and conjugation strains 10403SpclpL and 10403SpPL2 displayed.

Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.

Adapted viruses replicate in mismatched miR-122-expressing cells.

Volume 7, Issue 3, Pages e12 (September 2018)

Effect of small TbTim knockdown on cell growth.

Cecal metabolome during C. difficile colonization and infection.

KEGG pathway analysis of the C

Comparison of N. gonorrhoeae gene expression in infected men in vivo and isolates grown in vitro. Comparison of N. gonorrhoeae gene expression in infected.

Relative ITS2 abundance of Saccharomyces in stool over time as a Saccharomyces cerevisiae-free diet was consumed. Relative ITS2 abundance of Saccharomyces.

Log2-fold change in relative abundance of differentially abundant OTUs in PyOM300 and PyOM700 (a and b) and in Ps soil and Ar soil (c and d). Log2-fold.

Patterns of Somatically Acquired Amplifications and Deletions in Apparently Normal Tissues of Ovarian Cancer Patients Leila Aghili, Jasmine Foo, James.

Brandon Ho, Anastasia Baryshnikova, Grant W. Brown Cell Systems

Compositional PCA plot of samples (A) and OTU loadings (B) for the initial data set. Compositional PCA plot of samples (A) and OTU loadings (B) for the.

Introduction of an autocatalytic hammerhead ribozyme sequence permits use of the optimal T7 promoter to enhance transcription levels. Introduction of an.

Visualization of lineage radius increase.

Co-occurrence network in tongue microbiota of 506 elderly adults built from SparCC correlation coefficients between sequence abundances. Co-occurrence.

Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.

Relative abundances of microeukaryotic taxa detected by ITS2 analysis of DNA or cDNA from stool. Relative abundances of microeukaryotic taxa detected by.

Benchmarks of OTU picking tools on artificial communities.

Relationship between relative abundance and transcription/abundance ratio (logarithmic scales) of OTUs (brown), ZOTUs (turquoise), and population genomes.

Nonmetric multidimensional scaling (NMDS) (A) and dendrogram and heat map (B) of the relative abundances of the data in the custom database across the.

Proportions of Saccharomyces and Pichia in olive fermentations.

Minor variants expand the range of neonatal HSV-2 coding diversity.

The Amazon viral scaffolds and viral genomes most important for river and plume segregation. The Amazon viral scaffolds and viral genomes most important.

Proteomic tree. Proteomic tree. The dendrogram represents proteome-wide similarity relationships among 4,240 prokaryotic dsDNA virus genomes. Branches.

Volume 41, Issue 2, Pages (January 2011)

Comparison of levels of microbiome diversity by BMI, stratified by geography. Comparison of levels of microbiome diversity by BMI, stratified by geography.

Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.

Functional microbiome differences between high-fat and standard chow diets. Functional microbiome differences between high-fat and standard chow diets.

ITS rRNA gene locus. ITS rRNA gene locus. Schematic of the eukaryotic ribosomal gene cluster. The SILVA database contains sequences of the 18S gene, while.

Heterotrophic and autotrophic particle (cell) abundance in water column. Heterotrophic and autotrophic particle (cell) abundance in water column. Small.

Dominant bacterial phyla found in different stages.

Distribution of cellulase (A) and hemicellulase (B) CAZyme families among Fibrobacter strains. Distribution of cellulase (A) and hemicellulase (B) CAZyme.

Comparison between early-life and year 2 AMR levels.

RNA-seq analysis from the MVI-it culture indicates that a majority of the BGHV8 coding sequences are transcribed. RNA-seq analysis from the MVI-it culture.

Beta-diversity analyses of microbial taxa recovered from ATM keypads.

Locations of the Riverton City dump and adjacent Duhaney River sampling sites. Locations of the Riverton City dump and adjacent Duhaney River sampling.

Bipartite co-occurrence networks were generated in CoNet and visualized in Cytoscape to display significant strong positive and negative co-occurring relationships.

Relative proportions of taxa and UPGMA hierarchical clustering of the mock communities. Relative proportions of taxa and UPGMA hierarchical clustering.

Relative abundance of taxa in the 16S rRNA PCR amplicon and gDNA mock communities. Relative abundance of taxa in the 16S rRNA PCR amplicon and gDNA mock.

Distinct antibiotic pretreatments have differential impacts on C

High genomic fidelity of SCLC PDX models derived from both CTCs and biopsies. High genomic fidelity of SCLC PDX models derived from both CTCs and biopsies.

Northern shovelers may have unique microbiome differences with respect to IAV infection, relative to the other duck species. Northern shovelers may have.

Integrated analysis of gene expression and copy number alterations.

Comparison of 16S sequencing and shallow shotgun recovery of species-level taxa. Comparison of 16S sequencing and shallow shotgun recovery of species-level.

Batch variation of formulations from two products by two different genomic-scale techniques. Batch variation of formulations from two products by two different.

Infant skin and oral mycobiomes by birth mode.

Relative abundances of bacterial/archaeal groups in 16S rRNA data set.

Presentation transcript:

(A and B) Relative (A) and mean (B) abundances of reference viral genomes across the continuum summarized by host type. (A and B) Relative (A) and mean (B) abundances of reference viral genomes across the continuum summarized by host type. (A) The bar graph shows the relative abundances of the reference viral genomes according to their respective hosts. A succession of patterns from river to ocean is observed, where the river locations (brown), including Belém (Bel), north Macapá (NMac), south Macapá (SMac), Óbidos (Obi), and Tapajós (Tap), are dominated by viruses of eukaryotic organisms; the transitions (black), including transitions St10 and St11, show an increase in the levels of heterotrophic bacterial viruses; and the plumes (blue), including plumes St1, St3, St4, St6, and St15, possess more viruses that infect autotrophic organisms. (B) Scatterplot displaying the median abundances of sequences in samples from Amazon River (x axis) and plume (y axis). Each point represents a reference viral genome (color coded as described for panel A). The sizes of the points are inversely proportional to the false-discovery-rate (q) values, meaning that larger points display more-significant changes in abundance between the two sets of samples. Data corresponding to both axes are shown in log10 scale; the black line represents a 1:1 ratio. Bruno S. de O. Silva et al. mSphere 2017; doi:10.1128/mSphere.00366-17