Percentages of reactions showing different fluxes at doubled HCO3 levels per group as identified by the solution space sampling of the genome-scale metabolic.

Slides:

Advertisements

Similar presentations

Prediction of Therapeutic microRNA based on the Human Metabolic Network Ming Wu, Christina Chan Bioinformatics Advance Access Published January 7, 2014.

Advertisements

Purple Non-Sulfur Bacteria Christina Machak HMC 2012.

Energy Balance Analysis Reference Paper: Beard et al. Energy Balance for Analysis of Complex Metabolic Networks. Biophysical Journal 83, (2002) Presented.

PK a and Acid Strength pK a = -log K a K a pK a Trends:

Acid-Base Reactions strong acid + strong base strong acid + weak base weak acid + strong base weak acid + weak base.

Results grade1 grade2 grade3 (1) Can we identify metabolites or metabolic pathways that are associated with breast cancer clinical parameters? Alex-CIS-GCTOF.

Molar Concentration. Measuring Concentration Molarity (M): the number of moles of solute in 1 liter solution. Example: 0.5 moles of NaCl dissolved in.

 decimals/cc-7th-fracs-to-decimals/v/converting-fractions-to-decimals-example.

Carbon Cycle and Ocean Acidification Inspiration 9 V. Soutar.

Properties of the Steady State. Sensitivity Analysis “Metabolic Control Analysis” Flux and Concentation Control Coefficients:

网上报账系统包括以下业务：日常报销差旅费报销借款业务 1. 填写报销内容 2. 选择支付方式（或冲销借款） 3. 提交预约单 4. 打印预约单并同分类粘贴好的发票一起送至财务处预约报销步骤：网上报账系统薪酬发放管理系统财务查询系统 1.

Omic data from evolved E. coli are consistent with computed optimal growth from genome ‐ scale models by Nathan E Lewis, Kim K Hixson, Tom M Conrad, Joshua.

This is Jeopardy On With The Show.

Genome-Scale Methods Converge on Key Mitochondrial Genes for the Survival of Human Cardiomyocytes in HypoxiaClinical Perspective by Lindsay M. Edwards,

Illustration of the reactions and metabolites obtained from random sampling. Illustration of the reactions and metabolites obtained from random sampling.

الفعل ورد الفعل ♠ ♠ ♠ مجلس أبوظبي للتعليم منطقة العين التعليمية

Inorganic Carbon.

Self Replicating Chemical Systems MAS.S62 FAB

Distribution of single nucleotide variants (SNVs) for each virus and for two Ebola virus strains. Distribution of single nucleotide variants (SNVs) for.

Model predictions at various HCO3 conditions.

H-NS2 is upregulated in an hns mutant derivative of the strain E

Alignment of H-NS, H-NS2, and StpA amino acid sequences.

Schematic of the integration and results of the alveolar macrophage (iAB‐AMØ‐1410) and Mycobacterium tuberculosis (iNJ661) reconstructions. Schematic of.

Microbial diversity of the 10 body locations sampled.

Metabolic pathway changes of intracellular M. tuberculosis.

Plots of the number of sequences [log (x + 1) scale] from bacterial OTUs in both PCR replicates (PCR1 and PCR2) of the 348 wild rodents analyzed in the.

Transcription levels of metabolic pathways and genes in mother and infant pair 4 at time point 2. Transcription levels of metabolic pathways and genes.

Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number. Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number.

Maximum-likelihood phylogenetic tree of norovirus genomes belonging to genogroup GI, with the norovirus GII reference genome as an outlier. Maximum-likelihood.

Systematic analysis of host-pathogen interactions.

Genes affected concordantly within the ileum and meta-analysis data sets formed biofunctional clusters of overlapping pathways. Genes affected concordantly.

Validation of bioinformatic screening of a patient cohort.

Expression maps of selected metabolic pathways of Protochlamydia.

Pangenomes and core genomes of 13 M. florum strains.

PICRUSt analysis results of predicted functional pathways in the gut microbiota. PICRUSt analysis results of predicted functional pathways in the gut microbiota.

Overview of the seed set framework and metatranscriptomic mapping, using three genomes from the acI-C clade as an example. Overview of the seed set framework.

Pathway analysis of genes upregulated after RSV infection.

C.2.10 Sample Questions.

Log- to stationary-phase growth results in differential acetyl abundance on specific proteins. Log- to stationary-phase growth results in differential.

(a, b) Hypothetical scenario where 2 samples of 2 proportions may explain two different scenarios in the environment. (a, b) Hypothetical scenario where.

C.2.8 Sample Questions.

Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.

Transcription of cellulolytic genes disaggregated by genome.

C.2.8 Sample Questions.

Figure 5 Functional implications of gut microbial profile changes

Framework for integrating taxonomic and metabolomic data.

RNA-Seq analysis of CYR1 cells in the adaptation to acid pH.

Functional potential analyses.

A highly conserved six-amino-acid region in the C-terminal CT domain of MARCH8 is responsible for its ability to downregulate TfR. A highly conserved six-amino-acid.

Relationship between relative abundance and transcription/abundance ratio (logarithmic scales) of OTUs (brown), ZOTUs (turquoise), and population genomes.

(A) Amphibian SourceTracker analysis reveals that water is the only sample type that obtains a notable amount of its microbial community from amphibian.

N fluxes during N. europaea culture.

Daily percentages of probiotic oligotype reads found in the dolphin rectum samples. Daily percentages of probiotic oligotype reads found in the dolphin.

Effects of FMT on volatile fatty acid concentrations in the ileum (A), cecum (B), and colon (C) of offspring at ~155 days of age. Effects of FMT on volatile.

Transcription/abundance ratios (logarithmic scale) of OTUs, ZOTUs, and population genomes of selected microbial orders. Transcription/abundance ratios.

Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;

Most mutations were nonsynonymous, especially at the nodes of new clades, with affected genes encoding regulatory functions, lipid metabolism, and envelope.

Expression of selected genes in the ΔSMcomS strain in response to increasing concentrations of XIP. RT-PCR analysis of gene expression was performed in.

A suggested model for the role of CPPED1 in glucose metabolism.

A DOLMN flux solution of E. coli core carbon metabolism.

Carbon dioxide transport in blood.

Expression of selected intergenic regions in response to increasing concentrations of XIP. qRT-PCR analysis of gene expression was performed with strain.

Transcriptomic changes in strains PAK and PAKpmrB6 in response to polymyxin B (PMB). Transcriptomic changes in strains PAK and PAKpmrB6 in response to.

Venn diagram of core gene overlap of the Tannerella species.

KEGG categories of host DEGs (up- and downregulated genes) enriched at selected points after φAbp1 infection. KEGG categories of host DEGs (up- and downregulated.

The log-transformed reporter Z scores of the metabolic pathways showing significant differences between the PCOS and control groups. The log-transformed.

Relative abundance and expression of the 10 most abundant MAGs in the bioreactor at day 96. Relative abundance and expression of the 10 most abundant MAGs.

Milk-associated proteomes.

Presentation transcript:

Percentages of reactions showing different fluxes at doubled HCO3 levels per group as identified by the solution space sampling of the genome-scale metabolic model of P. tricornutum. Percentages of reactions showing different fluxes at doubled HCO3 levels per group as identified by the solution space sampling of the genome-scale metabolic model of P. tricornutum. Pigment metabolism contains most of the reactions with different fluxes under the two conditions, i.e., 43% of the reactions in this group were upregulated at high HCO3 concentrations, followed by nucleotide metabolism (19% in total; 17% upregulated and 2% downregulated) and amino acid metabolism (10%). Three reactions, namely, ITCY_c, CMP_c, and ITPA_c, belonging to nucleotide metabolism were downregulated at high HCO3 concentrations. Jennifer Levering et al. mSystems 2017; doi:10.1128/mSystems.00142-16