BIMS (Breeding Information Management System) for efficient management of phenotypic and genotypic data Sook Jung, Taein Lee, Chun-Huai Chen, Ksenija Gasic, Todd Cambell and Dorrie Main Connecting Crop Phenotype and Genotype Data workshop Workshop 2018 PAG Annual Conference, Jan 13-17, San Diego, CA

Vision To provide individual breeders with a secure and comprehensive online breeding management system which will allow them to: Store, manage, archive and analyze their private breeding program data Fully integrate their data with publicly available genomic, genetic and breeding data in the community database Manage data from the Field Book App, an android app for collecting phenotype data in the field Utilize their integrated pedigree, phenotype and genotype data in making breeding decisions To make it available for any Tripal-based crop/animal databases to implement

Components Archive Manage Breeding Data Import, Edit and Download Search and Compare Field Book App (app for collecting phenotype) Management Data Analysis Tools Breeding Decision Tools

Manage Breeding – Manage Program In manage program section, you can edit information on your program and also add members and give them privilege to read or read and write. Add members and give them privilege to read or read/write

Manage Breeding – Manage Trials/Cross View all crosses.

Manage Breeding – Manage Trials/Cross Clicking on a cross/trial provides data selectable by trait, stats about the trait and access to view/ download all the data for the cross/trial.

Data Import – Upload data from Templates In data upload, files can be uploaded. The status of the upload is shown. The history of files uploaded is being added with submission details.

Data Import - Templates In data import, templates for each type of data are available for download in template list page.

FieldBook App Management – upload data in FB output file Upload trait evaluation data collected with the Field Book App to BIMS

Search Accession Search accessions by any combination of properties and trait values

Future Development Search by genotype (raw SNP genotype and/or trait-associated allele) Generate individual accession report Data editing Breeding decision tools

Funding and Acknowledgement