A, genomic copy number profiles of chromosome 8 with array CGH in SUM-44, -52, and -225. A, genomic copy number profiles of chromosome 8 with array CGH.

Slides:

Advertisements

Similar presentations

HSA18q cen HSA9q qter HSA9p HSA9q cen HSA14q HSA15q qter HSA6q HSA9p pter HSA15q cen qter

Advertisements

PIK3CA gene amplification in glioblastoma and squamous cell carcinoma (SCC) of the lung. PIK3CA gene amplification in glioblastoma and squamous cell carcinoma.

Electronics for Pedestrians – Passive Components –

Parameterization of Tabulated BRDFs Ian Mallett (me), Cem Yuksel

Theoretical Results on Neutrinos

10. predavanje Novac i financijski sustav

Homozygous deletions within chromosome 9q23.

Online Learning: An Introduction

The Toroidal Sporadic Source: Understanding Temporal Variations

ارائه یک روش حل مبتنی بر استراتژی های تکاملی گروه بندی برای حل مسئله بسته بندی اقلام در ظروف

Howard Wiseman1 and Geoff Pryde1

Plan for Day 4 Skip ahead to Lesson 5, about Mechanism Construction

Quantum Algorithms and Cryptography

Chp9: ODE’s Numerical Solns

Gas-Electric Co-Optimization (GECO)

Gravitation and Cosmology I Introduction to Cosmology

On-Shell Methods in Quantum Field Theory

Magnetic Force.

2National Institute of Standards and Technology, Boulder, CO 80305

PROBLEM Using primers Inability of the weldable primer produced today to allow: Good Quality Welding Durable corrosion protection Without health hazards.

NA61/SHINE search for the critical point

Fig. 1. Genomic analysis. (A) Array CGH analysis of chromosome 12 performed on DNA from blood lymphocytes. Log 2 ratio data are presented according to.

From: Dependable and Efficient Clinical Utility of Target Capture-Based Deep Sequencing in Molecular Diagnosis of Retinitis Pigmentosa Invest. Ophthalmol.

The array comparative genomic hybridization (aCGH/CMA) technology

The clinical utility of next-generation sequencing for identifying chromosome disease syndromes in human embryos Junmei Fan, Li Wang, Hui Wang, Minyue.

BAC-Based Physical Map of the Rice Genome.

Novel chromosomal imbalances in mantle cell lymphoma detected by genome-wide array-based comparative genomic hybridization by Margit Schraders, Rolph Pfundt,

Volume 131, Issue 6, Pages (December 2006)

Diagnostic Genome Profiling in Mental Retardation

Volume 10, Issue 6, Pages (December 2006)

CSCI2950-C Lecture 3 September 13, 2007.

by Giridharan Ramsingh, Meagan A. Jacoby, Jin Shao, Rigoberto E

Volume 131, Issue 6, Pages (December 2006)

Regional genome association plots for the GWAS results of the FADS1/2/3 region of chromosome 11. Regional genome association plots for the GWAS results.

Alterations of the Cell-Cycle Inhibitors p27KIP1 and p16INK4a Are Frequent in Blastic Plasmacytoid Dendritic Cell Neoplasms Thomas Wiesner, Anna C. Obenauf,

Customized Oligonucleotide Array-Based Comparative Genomic Hybridization as a Clinical Assay for Genomic Profiling of Chronic Lymphocytic Leukemia Rachel.

High-Resolution Mapping of Genotype-Phenotype Relationships in Cri du Chat Syndrome Using Array Comparative Genomic Hybridization Xiaoxiao Zhang, Antoine.

A comparative genomic hybridization study in a 46,XX male

Histology and genomic copy number alterations in TRAMP tumors.

Distribution of informative SNPs with LOH (black bars) on each chromosome (rows, oriented p-arm at the bottom and q-arm at the top of each chromosome)

ROC curve for separating advanced stages (advanced BE and EA) versus early stages (BE or BE instability) using total genome-wide LOH [area under the curve.

High-Throughput Analysis of Subtelomeric Chromosome Rearrangements by Use of Array-Based Comparative Genomic Hybridization Joris A. Veltman, Eric F.P.M.

Chromosome 8 cDNA microarray gene expression profile of the amplified regions of 8p11–12 in SUM-44, -52, and -225 cells versus MCF10A HME control cells.

E.J. Hollox, J.A.L. Armour, J.C.K. Barber

Volume 10, Issue 6, Pages (December 2006)

Summary results from analyses to attempt to replicate previously reported DS+AVSD (Down Syndrome with a complete atrioventricular septal defect)-associated.

Differences in breast cancer risk between the 75th and the 25th percentile of urinary phytoestrogen excretion, by race-ethnic group, Multiethnic Cohort.

Mean C-to-U editing ratios for most editing sites map to a region on chromosome 6 at 122 Mb. (A) Genome scan of mean C-to-U editing for 70 editing sites.

MiRNA expression profiling in adipocytes from wild-type (WT) and leptin-deficient ob/ob mice. miRNA expression profiling in adipocytes from wild-type (WT)

Whole-chromosome view of gene density, inverse environmental variation, inverse total variation, and open chromatin signature. Whole-chromosome view of.

Clustergram of genes induced at 2 h after the end of treatment with 50 cGy γ-rays delivered at either (1) 290 cGy/min, (2) 29 cGy/min, (3) 2.4 cGy/min,

Performance and potency comparisons of qHTS runs.

Regional plot and genome browser view of 14q13.

CD8, galectin-3, galectin-9, and the M1/M2 ratio are associated with a longer survival. CD8, galectin-3, galectin-9, and the M1/M2 ratio are associated.

Pre- and post-vorinostat values of ER-related gene expression using the Oncotype DX 21-gene assay. Pre- and post-vorinostat values of ER-related gene expression.

A and B, images from a patient with an invasive carcinoma on the floor of the mouth. A and B, images from a patient with an invasive carcinoma on the floor.

Somatic mutational rates and survival analysis of IBD-CRC.

A, unsupervised clustering of all BRCA1 (red), BRCA2 (blue), and sporadic (green) breast tumors of our collection using the regions reported as discriminative.

Transcripts enriched and depleted in NB TICs compared with SKPs and other tumor tissues. Transcripts enriched and depleted in NB TICs compared with SKPs.

Comparison of variant associations from previous reports and results from the KP GWAS meta-analysis for 105 known prostate cancer risk SNPs. Plotted values.

Validation of GHSR, SST, and ZIC1 in hrHPV-positive cervical scrapes and their relation to duration of lesion existence and DNA copy number aberrations.

MPM cases with GNH. A, WES-based LOH profiling with the FACETS algorithm revealed three MPM samples with genome-wide LOH. B, Allelic copy-number plots.

Competition by G3139 for binding of ClRNH32P-OdT18 to collagen I (A), FGF2 (B), PDGF BB (C), and VEGF (D). Competition by G3139 for binding of ClRNH32P-OdT18.

Real-time PCR with SYBR Green Master Mix was used to quantify the expression levels of 84 genes ontologically related and regulated by TGF-β /BMP signaling.

Single nucleotide polymorphism array analysis can distinguish different genetic mechanisms that lead to loss of heterozygosity (LOH). Single nucleotide.

Array CGH results: (A) Rearrangement pattern at 22q13: the profile of chromosome 22 shows a terminal deletion of 8.4 Mb at 22q13.2q13.3 (chr23: 42 817 697–51 219 009 bp)

A, heatmap of copy number alterations determined by array CGH for a panel of 79 frozen NSCLC samples. A, heatmap of copy number alterations determined.

Integrated analysis of gene expression and copy number alterations.

Genomic and proteomic profiling of ovarian cancer cell lines.

A. A. Partial 6p ideogram with a contig of BAC/P1 clones used to generate region-specific array. Each bar represents a BAC/PAC clone. B. A representative.

Presentation transcript:

A, genomic copy number profiles of chromosome 8 with array CGH in SUM-44, -52, and -225. A, genomic copy number profiles of chromosome 8 with array CGH in SUM-44, -52, and -225. The log 2 ratios for chromosome 8 in order from pter to qter are plotted from left to right. B, the detailed map and log 2 ratios around 8p11-p12 region were recapitulated based on the April 2003 freeze of the UCSC Genome Working Draft. 6 Michael E. Ray et al. Cancer Res 2004;64:40-47 ©2004 by American Association for Cancer Research