Histidine kinases are expanded in the fusaria.

Slides:



Advertisements
Similar presentations
Figure S1_Yao Qin et al. Figure S1 Occurrence and distribution of trihelix family in different plant species. Red branches in the cladogram indicate that.
Advertisements

Sierra M. Love Stowell & Andrew P. Martin Student Figures
Phylogenetic characterization of the Bunyavirales-like viruses identified in this study. Phylogenetic characterization of the Bunyavirales-like viruses.
Complex phylogenetic relationships among sand-dwelling Malawi cichlids
Trimeric association of TMDs of Ebola virus GP, SARS CoV S, rabies virus GP, and influenza virus HA, as determined by SE-AUC. Trimeric association of TMDs.
The dicBF locus is conserved in E. coli species in different prophages
ClustalOmega alignment of FlaC protein sequences.
Genus-level genomic OTU (gOTU) richness.
Cryo-EM image reconstruction of the 2D3/MNV complex fitted with the atomic models of the MNV P domain dimer and two of the MAb 2D3 Fabs. Cryo-EM image.
Genomic rearrangements of E
Alignment of H-NS, H-NS2, and StpA amino acid sequences.
What Color is it?.
Evolutionary History of the Non-Specific Lipid Transfer Proteins
Genotyping and origin of the emergent U. S
Phylogenetic relationships within the family Astroviridae.
Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number. Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number.
Comparative phylogenetic analysis of sapoviruses based on complete RdRp and VP1 nucleotide sequences. Comparative phylogenetic analysis of sapoviruses.
Genomes with Fe-S cluster assembly-related genes.
Phylogeny of Shiga toxin-encoding phage from SDi/SJo S. sonnei isolates. Phylogeny of Shiga toxin-encoding phage from SDi/SJo S. sonnei isolates. (A) progressiveMauve.
Comparison of the variable regions of (A) pHNZY32, pHNZY118, and pHNAH24; (B) pHNMCC14; (C) pHNFKU92; (D) pE80; (E) pECB11; (F) p42-2; and (G) pSLK172-2.
TgCA_RP is most similar to the η-class carbonic anhydrase PfCA.
Structural Analysis of Ligand Stimulation of the Histidine Kinase NarX
Maximum likelihood (ML) unrooted tree based on the full-length 16S rRNA genes (A) and 31 conserved single-copy genes (B) showing the phylogenetic position.
Phylogenetic tree of 170 Lactobacillus species.
Error-Prone DNA Polymerases
(A, left) Radial cladogram based on RAxML-based maximum-likelihood phylogeny (500 bootstraps, gamma distribution model, and LG+F substitution model) constructed.
(A) Tiled view of an ESOM map constructed using all 51 metagenome bins assembled from the samples collected in this study, with the white square encompassing.
Phylogenetic tree based on 16S rRNA gene sequence comparisons over 1,260 aligned bases showing the relationship between species of the genus Actinomyces.
Phylogeny of the novel rhabdoviruses identified by UHTS
Phylogenetic tree of 38 Pseudomonas type strains, based on the V3-V5 region sequence of the 16S rRNA gene (V3 primer, positions 442 to 492; and V5 primer,
Protein sequence alignments for the BcfD (A) and StfH (B) allelic groups from S. Newport. Protein sequence alignments for the BcfD (A) and StfH (B) allelic.
Phylogenetic diversity of archaeal lineages in the great ape gut microbiome. Phylogenetic diversity of archaeal lineages in the great ape gut microbiome.
Successful spread and transmission of rifampin-resistant clones.
Phylogenetic tree of K. variicola and K
Volume 34, Issue 3, Pages (May 2009)
Maximum likelihood phylogeny of USA500 and other CC8 strains.
Phylogenetic analysis and amino acid sequences comparison of HO endonucleases. Phylogenetic analysis and amino acid sequences comparison of HO endonucleases.
Sequence conservation across the Ub-binding sites of human USPs
RNA-Seq analysis of CYR1 cells in the adaptation to acid pH.
Visualization of lineage radius increase.
Multiple sequence alignment of STAT6 and other STAT proteins produced by ClusterW and ESpript (espript.ibcp.fr/ESPript/ESPript/). Multiple sequence alignment.
NP sequence alignment of human H1N1 strains and phylogenetic analysis of representative NP from pandemic and seasonal H1N1 strains. NP sequence alignment.
Phylogenetic and convergence analyses of rpoB mutations.
(A) Taxonomic identity at the phylum level of raw leachate (RL) and enrichment microcosms (E) as determined via Ion Torrent 16S rRNA gene amplicon sequencing.
Phylogenetic analyses of alphacoronaviruses based on complete genome and ORF1ab protein sequence. Phylogenetic analyses of alphacoronaviruses based on.
Neighbor-joining tree based on nifH for 20 organisms along with the maximum-likelihood sequence obtained from aligning the soil data to the gene sequence.
General structure of RIFINs and STEVORs
Minor variants expand the range of neonatal HSV-2 coding diversity.
Proteomic tree. Proteomic tree. The dendrogram represents proteome-wide similarity relationships among 4,240 prokaryotic dsDNA virus genomes. Branches.
Phylogenetic tree of medically important flaviviruses based on E protein amino acid diversity. Phylogenetic tree of medically important flaviviruses based.
Phylogenetic tree of K. variicola from humans and animals.
The two-plasmid CRISPRi-system.
Phylogenetic analysis of K. quasipneumoniae subsp
Uptake of amino acids by C. albicans.
Neighbor-joining tree of the 262 S
Example of swimming trajectories from three groups of fish from three different weeks along with the extracted behavioral parameters. Example of swimming.
Neonatal HSV-2 genomes are genetically distinct from one another and encompass a broad range of known HSV-2 genetic diversity. Neonatal HSV-2 genomes are.
Volume 12, Issue 3, Pages (March 2019)
KEGG cluster of DEGs of S
Phylogenetic tree representation of a neighbor-joining analysis of several species of piroplasms. Phylogenetic tree representation of a neighbor-joining.
Pancreatic cancer cell lines are sensitive to knockdown of outlier kinases. Pancreatic cancer cell lines are sensitive to knockdown of outlier kinases.
Phylogenetic tree based on predominant 16S rRNA gene sequences obtained by C4–V8 Sutterella PCR from AUT-GI patients, Sutterella species isolates, and.
Phylogenetic trees of S. oralis and S. mitis strains.
Phylogenetic relationships between PBVs isolated in this study and representative members of the family Picobirnaviridae, based on the amino acid sequence.
Phylogenetic tree analysis of the Xenopus type III IFNs (A) with other known IFNs and the putative receptors (B) with relevant receptor families. Phylogenetic.
Phylogenetic tree of the complete genomes of 27 representative human (black) and camel (red) MERS-CoV strains rooted by NeoCoV (KC ). Phylogenetic.
Phylogenetic analysis of complete Fusobacterium genomes.
Driver pathways and key genes in OSCC
Tree depicting the phylogenetic relationships of all strains included in this study. Tree depicting the phylogenetic relationships of all strains included.
Unrooted neighbor-joining tree of 16S rRNA gene sequences from low-G+C-content gram-positive bacteria, obtained from clone libraries. Unrooted neighbor-joining.
Presentation transcript:

Histidine kinases are expanded in the fusaria. Histidine kinases are expanded in the fusaria. A phylogenetic tree was constructed for all two-component signaling histidine kinase nucleotide sequences and labeled according to their class (family) (neighbor-joining algorithm). Some kinases were excluded, as they lacked a large portion of the aligned conserved sequence among HisKs. Kinases that are part of the conserved ascomycete kinome (gray background), filamentous kinome (black background), and Fusarium kinome (white background) and kinases that are found only in fusaria in this study (orange background) are indicated. Fusarium oxysporum (Fo) gene identifiers (IDs) are colored red, and Fusarium graminearum (Fg) and Fusarium verticillioides (Fv) gene IDs are colored blue. All bootstrap values above 80% are shown. The domain structure for the class I and class IV HisKs are shown along with a heatmap of the copy number for each class among the fusaria. Gregory A. DeIulio et al. mSphere 2018; doi:10.1128/mSphere.00231-18