GeneCloud Reveals Semantic Enrichment in Lists of Gene Descriptions

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GeneCloud Reveals Semantic Enrichment in Lists of Gene Descriptions Gabriel Krouk, Clément Carré, Cecile Fizames, Alain Gojon, Sandrine Ruffel, Benoit Lacombe Molecular Plant Volume 8, Issue 6, Pages 971-973 (June 2015) DOI: 10.1016/j.molp.2015.02.005 Copyright © 2015 The Author Terms and Conditions

Figure 1 GeneCloud Concept and Details of the Results. (A) GeneCloud scheme of the algorithm. (B) Auxin-regulated genes defined as markers in Nemhauser et al. (2006) have been used to generate this word cloud. GeneCloud detects the term auxin as the most frequent term over the significantly over-represented terms (pval = 3.07e−14). (C) Screenshot of GeneCloud's user interface. (D) Results are sent in an e-mail containing specific links to sorted gene lists containing over-represented terms. (E) Each word in the table in (D) is a hyperlink to the genes containing the over-represented terms. Molecular Plant 2015 8, 971-973DOI: (10.1016/j.molp.2015.02.005) Copyright © 2015 The Author Terms and Conditions