ABLE detects synchronously spiking, densely packed cells from mouse in vitro imaging data. ABLE detects synchronously spiking, densely packed cells from.

Slides:



Advertisements
Similar presentations
Spike Train Statistics Sabri IPM. Review of spike train  Extracting information from spike trains  Noisy environment:  in vitro  in vivo  measurement.
Advertisements

SUMMERY 1. VOLUMETRIC FEATURES FOR EVENT DETECTION IN VIDEO correlate spatio-temporal shapes to video clips that have been automatically segmented we.
The gray-white matter boundary defines the locations and directions of the primary currents in the cortex and can be used as an anatomical constraint for.
Date of download: 7/6/2016 Copyright © 2016 SPIE. All rights reserved. Optical setup and schematic description of the acquisition. (a) Optical setup inside.
Week 8 Nicholas Baker.
PLGEM parameters are reasonably stable to decreasing number of replicates. PLGEM parameters are reasonably stable to decreasing number of replicates. A.
NSAF and GeneChip datasets have similar PLGEM parameters.
Volume 89, Issue 2, Pages (January 2016)
Tutorial 8 Table 3.10 on Page 76 shows the scores in the final examination F and the scores in two preliminary examinations P1 and P2 for 22 students in.
Dendritic spine density at P30 is elevated on isolated PirB−/− neurons in layer 2/3 after sparse excision of PirB at E15.5. Dendritic spine density at.
STDP regulates synchrony in fusiform cells of the guinea pig DCN
Modeling of an isolated rhythm-generating population.
(A) Refined profile principal component analysis loading weights plot was used to derive insight into possible association of biomarkers. (A) Refined profile.
PmCo feedback enhances MC responses to vomeronasal inputs.
Incidence and spatial extent of epileptiform events observed in widefield calcium imaging. Incidence and spatial extent of epileptiform events observed.
Trial-by-trial oscillatory power correlates of P(stop), go-RT, and PE at channel FCz. A, Correlation between fixation-locked (onset at 0 ms) power and.
Marker genes are selected for mouse brain cell types and used to estimate cell type profiles. Marker genes are selected for mouse brain cell types and.
Examples of sagittal histologic images and color-coded maps from 7
Image processing and computer vision pipeline for segmentation and cell detection. Image processing and computer vision pipeline for segmentation and cell.
GlyR activation modulates its diffusion properties around active synapses. GlyR activation modulates its diffusion properties around active synapses. A,
The effect of ETC duration and temperature on imaging depth.
Segregation of endolysosomal proteins in the Golgi complex.
Development of basic network properties in wild-type and pcdh19 mutant larvae. Development of basic network properties in wild-type and pcdh19 mutant larvae.
Neuronal responses to intracortical microstimulation in V1.
Volume 89, Issue 2, Pages (January 2016)
Coregulation of genes within TADs
Stress does not affect the volume fraction of fine astrocytic protrusions across the BA and the dCA3 area of the hippocampus. Stress does not affect the.
Two-photon imaging of GCaMP6s in zebrafish larvae.
MPP+-induced toxicity in cultured SN and VTA DA neurons.
A 59-year-old womam with HPV− HNSCC (T2N0M0).
OTX2 transfers into supporting cells of neurogenic niches.
Spatial statistics of X-ray volumes reveal layering and spatially diverse distribution of cell bodies. Spatial statistics of X-ray volumes reveal layering.
Increased network ensembles and altered Ca2+ dynamics in Panx1 KO cortical neurons. Increased network ensembles and altered Ca2+ dynamics in Panx1 KO cortical.
EEG-based classification accuracy for across- and within-expression discrimination of facial identity with temporally cumulative data (50–650 ms after.
Correlation of EEG- and behavioral-based estimates of pairwise face similarity. Correlation of EEG- and behavioral-based estimates of pairwise face similarity.
Kv2. 1-like currents are related linearly to estimates of Kv2
Intellicount provides a multifunctional analysis platform with commonly used graphical data representation and statistical methods. Intellicount provides.
IANX transiently increased cortical responses to maxillary molar pulp stimulation. IANX transiently increased cortical responses to maxillary molar pulp.
Activation of glial cells.
Effect of FGF8 on R-C marker expression.
The Fisher information predicts the experimentally measured sensitivity. The Fisher information predicts the experimentally measured sensitivity. A, Sensitivity.
Template application to detect KC-like activity.
Relationship between spiking and 5K signal in vivo.
HFOs resulting from noisy input to pyramidal cell population.
Tuning width distributions.
Averaged LSPS-induced excitation maps obtained from pyramidal and fast-spiking neurons in Layer II/III IC of sham and 1w-IANX rats. Averaged LSPS-induced.
BNST AVP cell ablations did not change the ability to discriminate between social odors. BNST AVP cell ablations did not change the ability to discriminate.
Reduction of PGC-1α isoforms, SDHA, and Tomm20 in PD
Analysis of individual full cells.
3DMorph workflow. 3DMorph workflow. The user selects either Interactive or Automatic mode. Interactive mode must be used first to generate a parameters.
IANX transiently decreased the cortical responses to the mandibular molar pulp stimulation. IANX transiently decreased the cortical responses to the mandibular.
Results from the ROI-restricted TBSS group analysis for the right dorsal cingulum. Results from the ROI-restricted TBSS group analysis for the right dorsal.
Distribution of examined mRNAs across CeA subcompartments.
STDP regulates synchrony in fusiform cells of the guinea pig DCN
Closed-loop experiments to probe the range of stimulus sensitivity.
Intellicount recapitulates analysis of synaptogenesis over time in cultured hippocampal neurons. Intellicount recapitulates analysis of synaptogenesis.
PreBötC activity in low [K+]o implicates neuronal activity from both subpopulations. PreBötC activity in low [K+]o implicates neuronal activity from both.
Leptin-induced LTP involves a PI 3-kinase-dependent process.
A, B, Startle magnitude and PPI after treatment with CNO
GABAARs in RFMes GABAergic neurons across groups.
HFD increased the number of ERα-expressing cells.
Entrainment of spiny neurons into antidromic stimulation is robust and time dependent. Entrainment of spiny neurons into antidromic stimulation is robust.
What do our results say about the comparison of different brain states
Firing rate during consummatory behavior at the early training time point. Firing rate during consummatory behavior at the early training time point. Cells.
Thy1S promoter drives sparse expression of hrGFP in marmoset cortex.
Experimental design. Experimental design. Animals were randomized to stimulation groups according to amphetamine rotation results (Amph-Rot) on week 10.
Acute applications display only slight pharmacological differences among menthol stereoisomers. Acute applications display only slight pharmacological.
A, The ratio of currents elicited by an EC50 concentration of ACh and 100 µm menthol over the current elicited by ACh alone. A, The ratio of currents elicited.
At P23, dendritic spine density on L2/3 pyramidal cells in PirB−/− visual cortex is similar to that of PirB+/+. At P23, dendritic spine density on L2/3.
Glissandi propagate from foot to foot in the CA1 to CA3 direction.
Presentation transcript:

ABLE detects synchronously spiking, densely packed cells from mouse in vitro imaging data. ABLE detects synchronously spiking, densely packed cells from mouse in vitro imaging data. The boundaries of the 207 detected ROIs are superimposed on the thresholded maximum intensity image (A) and the correlation image (D). For all correlation data we use Pearson’s correlation coefficient. ABLE detects ROIs that exhibit high correlation with the background (C) and neighboring synchronously spiking ROIs (B). B, Neuropil-corrected extracted time courses of the 207 ROIs (each plotted as a row of the matrix) along with the video mean raw activity and the time points of the electrical stimulations. C, Histogram of the correlation coefficient between the mean raw activity of the video and the extracted time series of each ROI. ABLE detected both active (E-G) and inactive ROIs (H, I). We display the contours of the two detected ROIs on the correlation image (E, H), the mean image (F, I) and the corresponding extracted time courses (G, J). Stephanie Reynolds et al. eNeuro 2017;4:ENEURO.0012-17.2017 ©2017 by Society for Neuroscience