MCBIOS 2016 – University of Memphis, TN

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Presentation transcript:

MCBIOS 2016 – University of Memphis, TN CyVerse Overview MCBIOS 2016 – University of Memphis, TN Jason Williams – Lead, CyVerse – Education, Outreach, Training Cold Spring Harbor Laboratory williams@cshl.edu [ @JasonWilliamsNY]

Welcome to the workshop Workshop Wiki: www.cyverse.org/ohio2016 Pre-Survey: www.iplantc.org/tswpre Grab: Packet/Badge/Red and Green Post-its Download CyberDuck – See wiki (updated) Log on to Etherpad (see workshop wiki)

Broad objectives we hope to enable Be able to upload/download/share any dataset ( MB, GB, TB /100-1000’s files) Run bioinformatics application with or without the command line Be able to create simple workflows and integrate new tools Get started with large data projects – RNA-Seq, Genome Assembly/annotation Use cloud computing to operate in a powerful restriction free environment

The limitations of any training workshop “I had the feeling I have been exposed to many bioinformatics tools but I would be unable to use any of them on my own.”

Some suggestions

1. Know what type of user you are (or want to be)

2. Look for what’s important to your research Get Science Done Ability to access and manage data Software to analyze data Computing resources Skills and help to use software and interpret results Ensure Reproducibility Metadata management Ability to share data and workflows Open source sustainable tools Increase Productivity High-performance and scalable computing Ability automate and collaborate Funding spent on science, not software or hardware

Don’t hesitate to ask “Can CyVerse do this?” 3. Keep asking questions If CyVerse can, we’ll help show you how… If CyVerse can’t we’ll find the path that gets you what you need Keep asking at ask.iplantcollabortive.org