Generation and in vitro characterization of recombinant NIEV

Slides:



Advertisements
Similar presentations
Manipulating DNA: tools and techniques
Advertisements

Jenny Patoka, Rizwana Ali, and Matthew D. Koci Department of Poultry Science, North Carolina State University, Raleigh, NC Introduction Astroviruses are.
General Microbiology (Micr300) Lecture 11 Biotechnology (Text Chapters: ; )
Genetic Engineering DNA Interactive:
Fig 11-1 Chapter 11: recombinant DNA and related techniques.
AP Biology: Chapter 14 DNA Technologies
-The methods section of the course covers chapters 21 and 22, not chapters 20 and 21 -Paper discussion on Tuesday - assignment due at the start of class.
How do you identify and clone a gene of interest? Shotgun approach? Is there a better way?
DNA Cloning and PCR.
Manipulation of DNA. Restriction enzymes are used to cut DNA into smaller fragments. Different restriction enzymes recognize and cut different DNA sequences.
Molecular Tools. Recombinant DNA Restriction enzymes Vectors Ligase and other enzymes.
Recombinant DNA Technology. DNA replication refers to the scientific process in which a specific sequence of DNA is replicated in vitro, to produce multiple.
Plasmids that contain l cos sites.
DNA Technology Ch. 20. The Human Genome The human genome has over 3 billion base pairs 97% does not code for proteins Called “Junk DNA” or “Noncoding.
Molecular Cloning. Definitions   Cloning :   Obtaining a piece of DNA from its original source (Genome) and introducing it in a DNA vector   Sub-cloning:
Viral and Bacterial Genomes & DNA Technology. Viruses Tiny; much smaller than a bacteria Basic structure: – Nucleic acid (DNA or RNA) enclosed in a protein.
Rupp et al. Supplementary Figure 1: Structure of the human troponin T gene Exon 6 Genomic DNA cDNA from mRNA mutation Exon 9 Exon bp Parts of genomic.
Chapter 7 Recombinant DNA Technology and Genomics
Bacterial Transformation
Introduction to Biotechnology
A B D C E 5 kb 2 kb Copies per 1,000 GAPDH copies. UL US TRL
Yujiao Yang, Chao Shan, Jing Zou, Antonio E
The Role of Recombinant DNA Technology in Biotechnology
Gene Isolation and Manipulation
Volume 19, Issue 6, Pages (June 2016)
Characterization of the Human Platelet/Endothelial Cell Adhesion Molecule-1 Promoter: Identification of a GATA-2 Binding Element Required for Optimal Transcriptional.
Vav‐1 gene‐targeting strategy.
Small RNA Sample Preparation
a b c Supplemental Figure 3. Kiem et al.
Self-Excising Retroviral Vectors Encoding the Cre Recombinase Overcome Cre- Mediated Cellular Toxicity  Daniel P. Silver, David M. Livingston  Molecular.
Demián Cazalla, Mingyi Xie, Joan A. Steitz  Molecular Cell 
Volume 44, Issue 5, Pages (May 2006)
Nucleosome Sliding via TBP DNA Binding In Vivo
The homeodomain protein Cdx2 regulates lactase gene promoter activity during enterocyte differentiation  Rixun Fang, Nilda A. Santiago, Lynne C. Olds,
In vitro and in vivo replication of MKWV and interferon-antagonism activity of MKWV NSs. (a) MKWV isolate MKW73 was used to inoculate cells derived from.
Volume 122, Issue 4, Pages (August 2005)
Npl3 functions as an independent export adaptor for the pre‐60S ribosomal subunit. Npl3 functions as an independent export adaptor for the pre‐60S ribosomal.
Disruption of the BGLF2 gene decreased infectious progeny production.
High Frequency Retrotransposition in Cultured Mammalian Cells
Regulation of CSF1 Promoter by the SWI/SNF-like BAF Complex
Volume 9, Issue 6, Pages (December 1998)
De novo generation of infectious ZIKVNatal by CPER
Structure of the GM2A Gene: Identification of an Exon 2 Nonsense Mutation and a Naturally Occurring Transcript with an In-Frame Deletion of Exon 2  Biao.
Transcriptional Regulation of ATP2C1 Gene by Sp1 and YY1 and Reduced Function of its Promoter in Hailey–Hailey Disease Keratinocytes  Hiroshi Kawada,
RAD51 is essential for L. donovani.
Linear Mitochondrial Plasmids of F
Thijn R Brummelkamp, René Bernards, Reuven Agami  Cancer Cell 
Development of an HIV-Based cDNA expression cloning system
High-Throughput Fitness Profiling of Zika Virus E Protein Reveals Different Roles for Glycosylation during Infection of Mammalian and Mosquito Cells 
IgH Class Switch Recombination to IgG1 in DNA-PKcs-Deficient B Cells
Barbara S Nikolajczyk, J.Aquiles Sanchez, Ranjan Sen  Immunity 
Producing DNA fragments eg for manufacturing insulin
Optimization of technical aspects for the genomic tagging approach.
Template Switching by RNA Polymerase II In Vivo
Establishment of a TgGAMA conditional-knockdown strain.
Development of an HIV-Based cDNA expression cloning system
Genomic structure of LTBP-4 around the 3rd 8-Cys repeat.
Pantelis Hatzis, Iannis Talianidis  Molecular Cell 
Effects of neomycin on CVB3-Nancy replication kinetics.
Fig. 1. Rnd2 and Rnd3 induce stress fibres whereas Rnd1 reduces stress fibres in endothelial cells.(A) Rnd mRNAs are expressed in HUVECs. Total RNA was.
Editing and reconstitution of CPAR2_
Expression of simA. Expression of simA. (A) Reverse transcriptase PCR (RT-PCR) of simA and a benA loading control performed on RNA isolated from wild-type.
Jiamiao Lu, Feijie Zhang, Mark A Kay  Molecular Therapy 
Construction and characterization of YF/NIEV chimera.
RhoH is underexpressed in HCL mediated by a transcriptional mechanism.
Exon Skipping in IVD RNA Processing in Isovaleric Acidemia Caused by Point Mutations in the Coding Region of the IVD Gene  Jerry Vockley, Peter K. Rogan,
Characterization of SFV-specific small RNAs bound by Piwi4 and Ago2 in Aag2 cells. Characterization of SFV-specific small RNAs bound by Piwi4 and Ago2.
Confirmation of spliced RNA in cells transfected with a wild-type or Pol(−) MR766 ZIKV plasmid. Confirmation of spliced RNA in cells transfected with a.
Detection of positive and negative KRBV genomic RNA strands as an indication of viral replication. Detection of positive and negative KRBV genomic RNA.
Primary GBM cells support productive HCMV replication in vitro.
Presentation transcript:

Generation and in vitro characterization of recombinant NIEV Generation and in vitro characterization of recombinant NIEV. (A) Schematic drawing of the NIEV genome organization and reverse genetics system. Generation and in vitro characterization of recombinant NIEV. (A) Schematic drawing of the NIEV genome organization and reverse genetics system. Depicted nucleotide positions indicate the borders of the encoded viral proteins or the genome end. Below the NIEV genome organization, the reverse-transcribed NIEV cDNA fragments, including the restriction sites used for cloning, are shown. An SP6 promoter sequence was fused to the 5′ end of the NIEV genome. EcoRI indicates the silent genetic marker mutation resulting in deletion of an EcoRI restriction site. After assembly of the cDNA fragments into two plasmids, in vitro ligation was performed followed by EagI linearization of the ligation product. The latter was transcribed in vitro, and the transcribed RNA was electroporated into C6/36 cells to recover rec NIEV. (B) Plaque morphology of wt NIEV and rec NIEV. Plaque morphology was analyzed by ICA in C6/36 cells using a tragacanth overlay. At 7 days postelectroporation, cells were fixed and subjected to crystal violet staining. (C) Growth kinetics of wt NIEV and rec NIEV. C6/36 cells were infected at an MOI of 0.1. Quantification of viral genome copies in the supernatant was performed by real-time PCR. Data represent means and ranges of results of duplicate infection experiments. (D) Verification of the genetic marker introduced into rec NIEV. Viral RNA was isolated from supernatants of cells infected with the indicated viruses and used as the template for RT-PCR spanning the region containing the deleted EcoRI site in rec NIEV. RT-PCR products were loaded either directly (−) or after EcoRI restriction (+) on an ethidium bromide-stained agarose gel. Sandra Junglen et al. mSphere 2017; doi:10.1128/mSphere.00375-16