ABCs program: Case report data since 1995 10 states 6 pathogens

Slides:



Advertisements
Similar presentations
Dr. Leo Obrst MITRE Information Semantics Information Discovery & Understanding Command & Control Center February 6, 2014February 6, 2014February 6, 2014.
Advertisements

OMG standards and related glossary entries. Proposed glossary entries Meta-model Production rule PRR SOA JSR 94 Business rules, SBVR and related entries.
TDWG GUID-2 June 10, 2006Jessie Kennedy/Rob Gales LSID Resolution In SEEK Taxon.
ISO TC184/SC4 Future architecture Rotterdam Progress on the Future SC4 Architecture PWI Friday 13 th November 2009.
Template and information based on data provided by DERI 1 Mondeca ITM presentation & possible (?) collaboration Semantic Web Portal Project Michael Stollberg.
Ontology Notes are from:
Zuoshuang “Allen” Xiang, Yongqun “Oliver” He University of Michigan Medical School 12/08/2010.
OWL-AA: Enriching OWL with Instance Recognition Semantics for Automated Semantic Annotation 2006 Spring Research Conference Yihong Ding.
Dynamic Ontologies on the Web Jeff Heflin, James Hendler.
Ontology Summarization Based on RDF Sentence Graph Written by: Xiang Zhang, Gong Cheng, Yuzhong Qu Presented by: Sophya Kheim.
Controlled vocabularies & Ontologies - DSS -. Malaria Decision Support System Integration of a number of data sets that will allow for informed choices,
The Core Infectious Disease Ontology. Purpose: To make infectious disease-relevant data deriving from different sources comparable and computable Across.
David Harrison Senior Consultant, Popkin Software 22 April 2004
The Infectious Disease Ontology with thanks to Albert Goldfain and Lindsay G. Cowell 1.
ISO Standards: Status, Tools, Implementations, and Training Standards/David Danko.
New trends in Semantic Web Cagliari, December, 2nd, 2004 Using Standards in e-Learning Claude Moulin UMR CNRS 6599 Heudiasyc University of Compiègne (France)
Common Data Elements and Metadata: Their Roles in Integrating Public Health Surveillance and Information Systems Ron Fichtner, Chief, Prevention Informatics.
 Copyright 2005 Digital Enterprise Research Institute. All rights reserved. Towards Translating between XML and WSML based on mappings between.
A J Miles Rutherford Appleton Laboratory SKOS Standards and Best Practises for USING Knowledge Organisation Systems ON THE Semantic Web NKOS workshop ECDL.
Denotation as a Two-Step Mapping in Semantic Web Architecture David Booth, Ph.D. Cleveland Clinic (contractor) Identity Workshop, IJCAI 2009, Pasadena.
Paul Groth VU University Amsterdam Convergence Meeting: Semantic Interoperability for Clinical Research & Patient.
PAHO Pan American Health Organization Pan American Sanitary Bureau Regional Office for the Americas for the World Health Organization.
Open Biomedical Ontologies. Open Biomedical Ontologies (OBO) An umbrella project for grouping different ontologies in biological/medical field –a repository.
IDO-Staph: An Ontology of Staphylococcus aureus Infectious Disease Albert Goldfain, Ph.D. Researcher, Blue Highway, Inc. Problems.
Resource Identity and Semantic Extensions: Making Sense of Ambiguity David Booth, Ph.D. Cleveland Clinic (contractor) Semantic Technology Conference 25-June-2010.
Integrating Modeling Tools in the Development Lifecycle with OSLC Miami, October 2013 Adam Neal (Presenter) Maged.
Developing “Geo” Ontology Layers for Web Query Faculty of Design & Technology Conference David George, Department of Computing.
© 2015 Core Knowledge Foundation. This work is licensed under a Creative Commons Attribution- NonCommercial-ShareAlike 3.0 Unported License.
Conceptual Data Modelling for Digital Preservation Planets and PREMIS Angela Dappert.
Ontology Architectural Support Options Group Name: MAS WG Source: Catalina Mladin, Lijun Dong, InterDigital Meeting Date: Agenda Item: TBD.
Query Health Concept-to-Codes (C2C) SWG Meeting #11 February 28,
A Semantic-Web Representation of Clinical Element Models
1 © The ATHENA Consortium. Term. Mgmt. compared to ontology creation Business importance of terms – use same term for same concept –To avoid.
Introduction to the Semantic Web and Linked Data Module 1 - Unit 2 The Semantic Web and Linked Data Concepts 1-1 Library of Congress BIBFRAME Pilot Training.
The RDF meta model Basic ideas of the RDF Resource instance descriptions in the RDF format Application-specific RDF schemas Limitations of XML compared.
Primary Primary sources means that it is original article or book created by an individual or sometimes a group of people. In simple terms primary sources.
1 Ontolog OOR-BioPortal Comparative Analysis Todd Schneider 15 October 2009.
Conclusions Presenter: Manolis Koubarakis Extended Semantic Web Conference 2012.
THE SEMANTIC WEB By Conrad Williams. Contents  What is the Semantic Web?  Technologies  XML  RDF  OWL  Implementations  Social Networking  Scholarly.
RDF David R Newman 15 May 2009.
Jens Hartmann York Sure Raphael Volz Rudi Studer The OntoWeb Portal.
Converting an Existing Taxonomic Data Resource to Employ an Ontology and LSIDS Jessie Kennedy Rob Gales, Robert Kukla.
Basic Concepts of OOP.  Object-Oriented Programming (OOP) is a type of programming added to php5 that makes building complex, modular and reusable web.
Extending the Metadata Registry for Semantic Web - Enforcing the MDR for supporting ontology concept - May 28, 2008 ISO/IEC JTC 1/SC 32 WG 2 Meeting Sydney,
OWL Web Ontology Language Summary IHan HSIAO (Sharon)
Immunology Ontology Workshop Buffalo, NY June 11-13, 2012.
Rinke Hoekstra Use of OWL in the Legal Domain Statement of Interest OWLED 2008 DC, Gaithersburg.
Institutional Web Management Conference | Goldsmiths College, University of London | 7-9 September 1999 Content management Stephen Emmott King’s Information.
Financial Industry Business Ontology (FIBO) Monthly Status/review call Wednesday November 2 nd 2011.
Background from the past, some numbers, general elements for EIONET FORUM SESSION 2 PRINCIPLES AND HISTORY.
The Biochemistry of Nutrition Examples of Projects.
Bioinformatics for Clinical Microbiology and Molecular Epidemiology: From Databases to Population Genetics João André Carriço 7 July 2010 Ciência 2010.
Jens Ziegler, Markus Graube, Johannes Pfeffer, Leon Urbas
Sharing models as social objects through HydroShare
Infectious Disease: A New Challenge for Biomedical Informatics
Stanford Medical Informatics
Treating Disease Learning Objectives: Describe how antibiotics work.
LexRDF: An Approach for Representing Biomedical Ontologies in RDF
Developments in ISO TC184/SC4 exchanging catalogues using XML
NKOS workshop Alicante, 2006
The State of Pneumococcal Disease Prevention
Services in a Converged WAN
Figure 1 Morphological and physiological changes
An ontology for e-Research
C = 10 c = 5.
Chapter 4 Research Find articles on the following related to business:
Game Inception and Design
Services in a Converged WAN
Epi-Ready The Value of Reporting Module 10.
Services in a Converged WAN
Presentation transcript:

Ontological Representation of CDC Active Bacterial Core Surveillance Case Reports ABCs program: Case report data since 1995 10 states 6 pathogens Illustrative example of an IDO-Staph based representation Proof of concept implementation: http://www.awqbi.com/ido/abccrf/ types ABCs Yearly Summary (original use case) Migration of paper form to web form. Server side linking to OBO ontologies, primarily IDO-Staph extension of IDO. RDF representation of case report (or several such in a triplestore) can be used for various purposes outside the original ABCs CDC scope (e.g., geographical spread of drug resistance and linkage to other clinical information). instances Case Report Secondary Applications / Surveillance Data Reuse