Clusters and Densities

Slides:

Advertisements

Similar presentations

R_SimuSTAT_2 Prof. Ke-Sheng Cheng Dept. of Bioenvironmental Systems Eng. National Taiwan University.

Advertisements

Original Figures for "Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring"

SEEM Tutorial 4 – Clustering. 2 What is Cluster Analysis?  Finding groups of objects such that the objects in a group will be similar (or.

Transformations Getting normal or using the linear model.

$100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300.

Part II - Clustering© Prentice Hall1 Clustering Large DB Most clustering algorithms assume a large data structure which is memory resident. Most clustering.

Spatial Statistics II RESM 575 Spring 2010 Lecture 8.

Using ESRI ArcGIS 9.3 Arc ToolBox 3 (Spatial Analyst)

From: McCune, B. & J. B. Grace Analysis of Ecological Communities. MjM Software Design, Gleneden Beach, Oregon

Overview Of Clustering Techniques D. Gunopulos, UCR.

Introduction to Mapping Sciences: Lecture #5 (Form and Structure) Form and Structure Describing primary and secondary spatial elements Explanation of spatial.

PRESIDENCY UNIVERSITY

Density Estimation Converts points to a raster The density of points in the neighborhood of a pixel No “Z” value is used ArcMap has a simple “Point Density”

Maximum-Likelihood Image Matching Zheng Lu. Introduction SSD(sum of squared difference) –Is not so robust A new image matching measure –Based on maximum-likelihood.

Density vs Hot Spot Analysis. Density Density analysis takes known quantities of some phenomenon and spreads them across the landscape based on the quantity.

Spatial Statistics Applied to point data.

Niloy J. Mitra Leonidas J. Guibas Mark Pauly TU Vienna Stanford University ETH Zurich SIGGRAPH 2007.

$100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300.

Sullivan Algebra and Trigonometry: Section 2.4 Circles Objectives Write the Standard Form of the Equation of a Circle Graph a Circle Find the Center and.

Galaxy clustering II 2-point correlation function 5 Feb 2013.

Data Types Entities and fields can be transformed to the other type Vectors compared to rasters.

Clustering Procedure Cheng Lei Department of Electrical and Computer Engineering University of Victoria April 16, 2015.

Geometry 9-6 Geometric Probability. Example Find the probability that a point chosen randomly in the rectangle will be: Inside the square. 20 ft 10 ft.

Ripley K – Fisher et al.. Ripley K - Issues Assumes the process is homogeneous (stationary random field). Ripley K was is very sensitive to study area.

PERIMETER & AREA. The distance around any closed figure.

Spatial Statistics in Ecology: Point Pattern Analysis Lecture Two.

What’s the Point? Working with 0-D Spatial Data in ArcGIS

Point Pattern Analysis Point Patterns fall between the two extremes, highly clustered and highly dispersed. Most tests of point patterns compare the observed.

10-3 Example 1 What is the surface area of the rectangular prism?

So, what’s the “point” to all of this?….

Math – Distance and Midpoint Formulas; Circles 1.

Exploratory Spatial Data Analysis (ESDA) Analysis through Visualization.

ICC_MAN (n=3385 total processed MRI with M status ): min max mean median std range 25 quartile 50 quartile 75 quartile.

Special Topics in Geo-Business Data Analysis Week 3 Covering Topic 6 Spatial Interpolation.

Multivariate statistical methods Cluster analysis.

Cluster Analysis What is Cluster Analysis? Types of Data in Cluster Analysis A Categorization of Major Clustering Methods Partitioning Methods.

INTERPOLATION Procedure to predict values of attributes at unsampled points within the region sampled Why?Examples: -Can not measure all locations: - temperature.

An Analysis of Organic Farms Proximity to Schools in Maine by Olivia Avidan (‘15) Abstract: This analysis identifies the number of organic farms within.

Calculus 3 The 3-D Coordinate System. The 3D coordinate plane.

Wed 4/13 Lesson 10 – 3 Learning Objective: To graph circles Hw: Pg. 634 #5 – 61 eoo, skip 13, 47.

Density Estimation Converts points to a raster

Cases and controls A case is an individual with a disease, whose location can be represented by a point on the map (red dot). In this table we examine.

Designing a Spatial/GIS Project

distance prediction observed y value predicted value zero

Spatial analysis Measurements - Points: centroid, clustering, density

Summary of Prev. Lecture

Portland Crash Severity Analysis for

Lindita Camaj Associate professor

Overview Of Clustering Techniques

Clustering and randomness

Clustering and randomness

Modeling sub-seismic depositional lobes using spatial statistics

(x2,y2) (3,2) (x1,y1) (-4,-2).

Spatial Point Pattern Analysis

Reflections Reflect the object in the x axis

QQ Plot Quantile to Quantile Plot Quantile: QQ Plot:

Nicholas A. Procopio, Ph.D, GISP

Discovery of Interesting Spatial Regions

Register variation: correlation, clusters and factors

Standard Deviation How many Pets?.

Clusters and Densities

Find the distance between the star and circle

(a) Hierarchical clustering of closed-reference OTUs based on mean pH; (b) balance of low-pH-associated organisms (3.8 < mean pH < 6.7) and high-pH-associated.

Topic 5: Cluster Analysis

Clustering The process of grouping samples so that the samples are similar within each group.

SEEM4630 Tutorial 3 – Clustering.

CS 685: Special Topics in Data Mining Jinze Liu

T2_MAN , n=92 min max mean median std range 25 quartile 50 quartile

Presentation transcript:

Clusters and Densities Do features cluster and at what distance? Ripley’s K (ArcMap) Plotting Sum of Squares ® Where are the clusters? K-Means clustering (R) Density surfaces Kernel Density Methods Hierarchical Methods Dendrograms

Spatial Cluster Analysis Wikipedia

Ripley’s K Measure of spatial homogeneity http://www.stat.iastate.edu/preprint/articles/2001-18.pdf

L(d) Expected: for random data Observed: k drives the model k = 1 when distance from i to j < d k = 0 when distance from i to j >=d

Ripley’s K Counts the number of points within a distance of each other

Cluster Analysis ArcGIS Help

Ripley’s K - ArcGIS ArcGIS Help

Ripley’s K Small circles have no points within distance

Ripley’s K At the right distance, we have more points within the distance than expected

Ripley’s K At large distances, we include the expected number of points.

Random Data

Multi-Distance Cluster Analysis