Fungi most closely related to A. gossypii.

Slides:

Advertisements

Similar presentations

FOG: High-Resolution Fungal Orthologous Groups René van der Heijden Project 5.10: Comparative genomics for the prediction of protein function and pathways.

Advertisements

Nematospora seed rot and lint stain: Distribution, Importance and Association with Hemiptera Alois Bell, Juan Lopez, Jr., Enrique Medrano, Jack Bacheler,

MB-PO13 T S. graminisoli NBRC T S. shenzhenensis DSM T Fig. S1. Substrate mycelium appearance of strain MB-PO13 T and related Streptomyces.

Figure A. Molecular phylogenetic tree of β-catenin and related proteins. The human E-cadherin and α-catenin were used for root tree. Phylogenetic analyses.

gt 3 gt 1 gt 2 gt 4 swHEV sw-NL Netherlands (EU526647)

Overview of the MAT-A loci in single spore isolates from V. volvacea.

Skin microbiota is the main reservoir of Roseomonas mucosa, an emerging opportunistic pathogen so far assumed to be environmental S. Romano-Bertrand,

Harnessing the Potential of the Tea Tree Genome

Volume 21, Issue 3, Pages (October 2017)

Volume 21, Issue 3, Pages (October 2017)

Tracking the naturally occurring mutations across the full-length genome of hepatitis B virus of genotype D in different phases of chronic e-antigen-negative.

Rare Missense and Synonymous Variants in UBE1 Are Associated with X-Linked Infantile Spinal Muscular Atrophy Juliane Ramser, Mary Ellen Ahearn, Claus.

Genotyping and origin of the emergent U. S

Phylogenetic relationships within the family Astroviridae.

Fig. 4 Phylogeny of rabies strains isolated during and after the mass vaccination campaign. Phylogeny of rabies strains isolated during and after the mass.

Hepatitis E virus as a newly identified cause of acute viral hepatitis during human immunodeficiency virus infection P. Colson, C. Dhiver, R. Gérolami

Enterovirus D68 nosocomial outbreak in elderly people, France, 2014

Lauren M. Mathews, Susan Y

Volume 17, Issue 5, Pages (March 2007)

Comparative phylogenetic analysis of sapoviruses based on complete RdRp and VP1 nucleotide sequences. Comparative phylogenetic analysis of sapoviruses.

Phylogenetic tree of genome-sequenced bacterial strains from the Populus microbiome. Phylogenetic tree of genome-sequenced bacterial strains from the Populus.

Isolation and phylogenetic characterization of ISS strains.

High-affinity iron permease (FTR1) gene sequence-based molecular identification of clinically important Zygomycetes I. Nyilasi, T. Papp, Á. Csernetics,

Development of a real-time PCR assay for the specific detection and identification of Streptococcus pseudopneumoniae using the recA gene V. Sistek, M.

Phylogenetic tree of Leclercia spp

The mosaic genome structure and phylogeny of Shiga toxin-producing Escherichia coli O104:H4 is driven by short-term adaptation K. Zhou, M. Ferdous, R.F.

Analysis of the complete genome sequences of human rhinovirus

Outbreak of hand, foot and mouth disease/herpangina associated with coxsackievirus A6 and A10 infections in 2010, France: a large citywide, prospective.

MW polyomavirus and STL polyomavirus present in tonsillar tissues from children with chronic tonsillar disease J. Peng, K. Li, C. Zhang, Q. Jin Clinical.

Phylogenetic tree of 170 Lactobacillus species.

Phylogenetic trees of the closest eukaryotic homologs of clones AY and AY Phylogenetic trees of the closest eukaryotic homologs of clones.

Advances in Understanding Bacterial Pathogenesis Gained from Whole-Genome Sequencing and Phylogenetics Elizabeth Klemm, Gordon Dougan Cell Host & Microbe

sac mutants are hypersensitive to IR

Successful spread and transmission of rifampin-resistant clones.

Screening and detection of human enterovirus 71 infection by a real-time RT-PCR assay in Marseille, France, 2009–2011 C.Y.Q. Tan, G. Gonfrier, L. Ninove,

Phylogenetic tree of K. variicola and K

Molecular epidemiology and genetic diversity of human astrovirus in South Korea from 2002 to 2007 A.Y. Jeong, H.S. Jeong, M.Y. Jo, S.Y. Jung, M.S. Lee,

Maximum likelihood phylogeny of USA500 and other CC8 strains.

Isolation and Characterization of Viruses Related to the SARS Coronavirus from Animals in Southern China by Y. Guan, B. J. Zheng, Y. Q. He, X. L. Liu,

Phylogenetic analysis and amino acid sequences comparison of HO endonucleases. Phylogenetic analysis and amino acid sequences comparison of HO endonucleases.

Phylogenetic tree. Phylogenetic tree. Shown are circle phylogram relationships for known genotypes of HRV-A, HRV-B, and HRV-C. The tree was calculated.

Two cycad AOX genes, CrAOX1 and CrAOX2, showing different expression patterns in thermogenic male cones. Two cycad AOX genes, CrAOX1 and CrAOX2, showing.

Sampling locations and IDs for accessions sequenced in this study.

Distribution of deletions and insertions in the ade6-(GACC)7ΔT repeat.

Haplotype map of S. cerevisiae RNQ1.

Organization of TCAST elements within T

Genomic phylogeny reveals the long-term coexistence of diverse clades.

Rooted neighbor-joining tree inferred from the concatenated MLST typing scheme sequences (CAP59, GPD1, LAC1, SOD1, URA5, and PLB1 genes and IGS) of 10.

Fig. 4 Sequence divergence based on RAD sequences in five scaffolds containing genital QTL candidate genes between parapatric species with diverged genital.

Phylogenetic tree of K. variicola from humans and animals.

Novel West Nile virus lineage 1a full genome sequences from human cases of infection in north-eastern Italy, 2011 L. Barzon Clinical Microbiology and.

Phylogenetic analysis of K. quasipneumoniae subsp

Neighbor-joining tree of the 262 S

Neonatal HSV-2 genomes are genetically distinct from one another and encompass a broad range of known HSV-2 genetic diversity. Neonatal HSV-2 genomes are.

Volume 21, Issue 23, Pages (December 2011)

Characterization of SsPV1/WF-1 isolated from hypovirulent strain WF-1.

Information on sequenced Q. lobata adult #786.

CDCP1 colocalizes and interacts with MT1-MMP.

Distance tree of ITS2 rRNA gene sequences of 54 strains belonging to species known as black-grain mycetoma agents. Distance tree of ITS2 rRNA gene sequences.

Phylogenetic tree based on predominant 16S rRNA gene sequences obtained by C4–V8 Sutterella PCR from AUT-GI patients, Sutterella species isolates, and.

Neighbor joining tree showing relationships between the human cannabinoid CB1 and CB2 receptors and other human rhodopsin α-group type G protein-coupled.

A and B, two blocks from the original specimen used for TMA demonstrated areas with varying patterns of ALK rearrangement and KRAS mutation status. A and.

Fig. 4 Genomic and transcriptomic analysis of T

Phylogenetic tree analysis of the Xenopus type III IFNs (A) with other known IFNs and the putative receptors (B) with relevant receptor families. Phylogenetic.

Phylogenetic tree of the complete genomes of 27 representative human (black) and camel (red) MERS-CoV strains rooted by NeoCoV (KC ). Phylogenetic.

Relationship of partial rpoB gene sequences inferred by the neighbor-joining method for Canadian study strains of C. pyruviciproducens. Relationship of.

Phylogenetic analysis of complete Fusobacterium genomes.

Genotypic and phenotypic characterization of yeast strains isolated from ancient vessels. Genotypic and phenotypic characterization of yeast strains isolated.

Tree depicting the phylogenetic relationships of all strains included in this study. Tree depicting the phylogenetic relationships of all strains included.

ADAGE extracted features that represented sequence differences between strains. ADAGE extracted features that represented sequence differences between.

Presentation transcript:

Fungi most closely related to A. gossypii. Fungi most closely related to A. gossypii. Neighbor joining phylogenetic tree of the known and newly isolated Nematosporaceae based on ITS sequences, along with Kluyveromyces lactis, and with S. cerevisiae as an outgroup. Ashbya sp. RS isolated from red-shouldered bugs and Ashbya sp. western boxelder (WBE) isolated from western boxelder bugs are as-yet uncharacterized beyond ITS sequencing. A. aceri is a fungus isolated from an eastern box elder bug shown in the insert. Its complete genome sequence was determined during this work. A. gossypii Florida isolate was isolated from a large milkweed bug shown in the insert. Its complete genome sequence also was determined during this work. The white arrows in the insect images indicate the probosci through which these insects feed, and through which the fungus is transmitted between the plant and the insect. A. gossypii has been described before to be spread by the cotton stainer (Ashby and Nowell 1926; Frazer 1944). A. gossypii ATCC10895 refers to the reference strain for all Ashbya species the genome of which was resequenced for the comparative analyses presented in this study This A. gossypii reference strain from the American Type Culture Collection was isolated from diseased cotton (Ashby 1916) and most likely originated from the US Agricultural Research Service strain collection (NRRL Y-1056), where it was obtained from William J. Robbins, who reported obtaining it from the Centraalbureau Voor Schimmelcultures (CBS) (Robbins and Schmidt 1939), where A. gossypii had been deposited by S. F. Ashby in 1926 (CBS 109.26), and possibly the same strain was deposited by Alexandre Guilliermond in 1928 (CBS 117.28). Holleya sinecada has been reported to be spread by the False Chinch bug (Burgess and McKenzie 1991), and Nematospora coryli by the Green stink bug (Clarke and Wilde 1970). Specific insect species have not been associated with Eremothecium cymbalariae or Eremothecium ashbyii. It has been suggested that all of the fungi of the family Nematosporaceae are spread by heteropterous insects (Batra 1973). GenBank accession numbers for the ITS sequences of the other Nematosporaceae are U09326.1 for Nematospora coryli, FJ422506.1 for Holleya sinecauda, AY046219.1 for Eremothecium cymbalariae, AB478315.1 for Eremothecium ashbyii, AJ229069.1 for the yeast Kluyveromyces lactis, and NC_001144 for Saccharomyces cerevisiae. The available ITS sequence data cannot well resolve the structure of the tree at the base of the Nematosporaceae clade. Fred S. Dietrich et al. G3 2013;3:1225-1239 ©2013 by Genetics Society of America