16S rRNA gene survey reveals a moderate impact of formula-based B

Slides:



Advertisements
Similar presentations
Clostridium difficile Colitis or Dysbiosis. Symbiostasis/Dysbiosis.
Advertisements

JAMA Pediatrics Journal Club Slides: Cesarean Delivery, Formula Feeding, and Intestinal Microbiome of Infants Madan JC, Hoen AG, Lundgren SN, et al. Association.
S A N D I E G O U N I F I E D S C H O O L D I S T R I C T - H I V P R I O R I T Y 2014 School Health Profiles Report Weighted Principal Survey Results.
S A N D I E G O U N I F I E D S C H O O L D I S T R I C T
VISUALIZING COMPLEX BACTERIAL POPULATIONS IN ANIMAL MODELS
Taxonomic composition of subway microbial communities.
Diversity of plants in a diet.
Microbial community dissimilarity.
Microbiomic changes during inhaled interferon (IFN)-γ
Fig. 4. Specific antibiotics reduce fecal biomass in mice and humans.
Microbial diversity was broadly compared across three unique built-environment study sites for 16S rRNA amplicon and shotgun metagenome sequencing. Microbial.
Effect of protocol modifications.
Comparison of DNA extraction methods.
Blooms and effect sizes.
Intervention effects on taxonomic and functional pathway diversity of the intestinal microbiome. Intervention effects on taxonomic and functional pathway.
Volume 23, Issue 6, Pages (June 2016)
Formula feeding affects the resistome.
Gut microbial diversity of mice in voluntary and forced exercise groups. Gut microbial diversity of mice in voluntary and forced exercise groups. Weighted.
(a) PCoA of the abundance of unique OTUs per sample from the 16S marker gene sequencing data from the AGP data repository (small spheres) and the San Diego.
Microbial diversity of the 10 body locations sampled.
Putative MBTA microbial community sources.
1H NMR-based fecal metabolomics assessment of gut microbial functional activity in response to monkey milk, standard infant formula, or B. lactis-supplemented.
Temporal and spatial patterns.
Taxonomic composition of the baboon and human gut microbiota.
(a) Correspondence analysis of 88 soil samples.
OTU and beta-diversity novelty.
Unweighted UniFrac PCoA plots.
FIGURE 1 α-Diversity comparisons of gut microbiota from DM and MOM infants by age and antibiotic exposure. Using ... FIGURE 1 α-Diversity comparisons of.
Pairwise analysis of detected virus taxonomy prior to and following intervention. Pairwise analysis of detected virus taxonomy prior to and following intervention.
Bacterial community dissimilarity, as measured by weighted UniFrac, a quantitative measurement (a), and unweighted UniFrac, a qualitative measurement (b),
Enterotypes of the distal gut microbial profiles.
Stability of fecal microbiomes in different preservatives and under different temperature treatments. Stability of fecal microbiomes in different preservatives.
(a) Hierarchical clustering of closed-reference OTUs based on mean pH; (b) balance of low-pH-associated organisms (3.8 < mean pH < 6.7) and high-pH-associated.
Proportion of 16S rRNA gene sequences in each category of phylogenetic novelty relative to cultures for each environment, by amplicons, metagenomes (without.
The Inuit microbiome has a community composition similar to that of the Western microbiome. The Inuit microbiome has a community composition similar to.
Aboveground and belowground samples showed differences in their bacterial community structures and compositions, while bulk soil and root communities differed.
1H NMR-based urinary metabolomics assessment revealed different profiles between standard formula-fed and B. lactis-supplemented formula-fed rhesus infants.
Trends in metabolite predictability in terms of key gene contributors.
Comparison of fecal metabolite concentrations in breast-fed (BF, green), standard formula-fed (FF, red), and B. lactis-supplemented formula-fed (FF + B.
1H NMR-based serum metabolomics revealed minor differences between standard formula-fed and B. lactis-supplemented formula-fed rhesus infants. 1H NMR-based.
Functional potential analyses.
(A) Box-and-whisker plots illustrate the median, maximum, minimum, and first and third quartiles of the distribution of the number of observed OTUs and.
Belowground microbiome community responses.
Microbial composition of mother and infant samples and shared bacteria within mother-infant pairs. Microbial composition of mother and infant samples and.
DSS + αIL10R colitis is associated with differential changes of bacterial composition in the lumen and mucosa. DSS + αIL10R colitis is associated with.
A principal-coordinate analysis plot of UniFrac distances from de novo OTUs as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.
Effect on immune response following B. lactis administration.
Microbial communities of the differently treated mice with lupus cluster separately after treatment. Microbial communities of the differently treated mice.
Benchmarks of OTU picking tools on artificial communities.
Shifts in the microbial community compositions of the control and antibiotic groups. Shifts in the microbial community compositions of the control and.
mtDNA genotypes correlate with gut microbiota composition.
A principal-coordinate analysis plot of UniFrac distances from Deblur as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.
The ND6P25L mtDNA mutation reduces gut microbiota diversity in C57BL/6J mice. The ND6P25L mtDNA mutation reduces gut microbiota diversity in C57BL/6J mice.
Sequence variation of 16S rRNA gene primer-binding sites.
A principal-coordinate analysis plot of UniFrac distances from UNOISE2 as visualized by Emperor. A principal-coordinate analysis plot of UniFrac distances.
Principal-coordinate analysis (PCoA) (Hellinger distance metric) of plant community (A), soil chemistry (B), 16S rRNA gene (prokaryotic) (C), and ITS (fungal)
Above- and belowground community structure along cheatgrass, spotted knapweed, and leafy spurge invasion transects. Above- and belowground community structure.
Comparison of gut microbiota alpha diversity in different preservatives based on 16S rRNA gene V3-V4 amplicon sequencing. Comparison of gut microbiota.
by Peter J. Turnbaugh, Vanessa K. Ridaura, Jeremiah J
PCoA plots of subgingival samples with disease classification overlaid
Procrustes analysis comparing the spatial fit of unweighted UniFrac principal-coordinate matrices of bacterial communities (yellow spheres) and Bray-Curtis.
Beta-diversity analyses of microbial taxa recovered from ATM keypads.
Relationships between antimicrobial chemicals, features of the built environment, and microbial communities. Relationships between antimicrobial chemicals,
Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.
Fig. 5 Clustering of the distal gut microbiome, the C
General overview of the bioinformatic pipelines for the 16S rRNA gene microbial profiling and shotgun metagenomics. General overview of the bioinformatic.
Median unweighted UniFrac distances between three dolphin habitats: Shedd, MMP, and Sarasota. Median unweighted UniFrac distances between three dolphin.
Effect of bloom filtering on American Gut data.
Infant skin and oral mycobiomes by birth mode.
Presentation transcript:

16S rRNA gene survey reveals a moderate impact of formula-based B 16S rRNA gene survey reveals a moderate impact of formula-based B. lactis supplementation on the fecal microbial community profile. 16S rRNA gene survey reveals a moderate impact of formula-based B. lactis supplementation on the fecal microbial community profile. (A) Principal-coordinate analysis (PCoA) of unweighted UniFrac distance of 16S rRNA gene sequences exhibits a difference between the breast-fed group and the two formula-fed groups. (B to D) The corresponding change at 4 weeks (B), 8 weeks (C), and 12 weeks (D) of age between the two formula-fed groups suggested a shift in fecal microbial community structure in response to B. lactis supplementation that was moderate and temporal at the time of observation, exhibiting a trend of moving toward a state that was different from that of the standard infant formula group near the end of the study. Xuan He et al. mSystems 2016; doi:10.1128/mSystems.00128-16