- FunCat terms associated with DEGs found in vs.

Slides:



Advertisements
Similar presentations
Classroom Bill of Rights
Advertisements

How will you know what your experimental data means? Student’s Lab Notebook.
Questions for lab Halobacterium is an extremophile. In which conditions is it able to grow? In which conditions does it grow best? In what ways do halo.
Photosynthesis.
© red ©
I.1 ii.2 iii.3 iv.4 1+1=. i.1 ii.2 iii.3 iv.4 1+1=
I.1 ii.2 iii.3 iv.4 1+1=. i.1 ii.2 iii.3 iv.4 1+1=

GTL User Facilities Facility II: Whole Proteome Analysis Michelle V. Buchanan.
Concepts Review: Functions of Cellular Activity. Question 1 I.) What is a cell, and what does it do?
Biomax Informatics AG Bioinformatics designed with you in mind. FunCat TM, a controlled vocabulary encompassing the biology of prokaryotes, plants and.
Figure S1 (a) (b) Fig. S1. Hydroponics culture of Arabidopsis thaliana. (a) Illustration of the hydroponics system in the growth chamber. (b) close-up.
Large black circles: query genes grey circles: interacting or related proteins Light grey line: consolidated pathways Yellow: predicted pathways Green:
Biology 1 – Big Ideas. I. Organisms share common characteristics of life. (Chapter 1) Essential Question: How do we know if something is alive?
Chemical Reactions & Enzymes
Functioning of Guard Cells
ОПШТИНА КУРШУМЛИЈА.
Regular Bio Characteristics of Life
Extension of the GlyRβ binding site on gephyrin.
Level 0.
Q-Q plot of observed P values against theoretical P values for factor analysis (red dots) and single gene–based methods (in blue). Q-Q plot of observed.
ADV-1 downstream targets identified by ChIP-seq and RNA-seq are enriched for ccgs. ADV-1 downstream targets identified by ChIP-seq and RNA-seq are enriched.
The ETS-CRE array identifies genomic sequences specifically cobound by CREB1 and GABPα. The ETS-CRE array identifies genomic sequences specifically cobound.
Whole body deletion of VEGFR-2 results in vascular defects, with glomerular thrombotic microangiopathy. Whole body deletion of VEGFR-2 results in vascular.
Index Notation Sunday, 24 February 2019.
What Color is it?.
Highly simplified schema (not true to scale) of the composition of the SCC family integrated into the S. aureus chromosome (blue). Highly simplified schema.
Comparison of functions between the Gsub bacterium and the reference genomes. Comparison of functions between the Gsub bacterium and the reference genomes.
Schematic of cellular role categories of theoretical (open bars) and identified proteins on a 2-D electrophoresis gel, pH 4–7 (black bars), in L. casei.
Frequency distribution of the GRAVY of the theoretical proteins (open bars) and of 110 genes encoding proteins identified on a 2-D electrophoresis gel,
The protein-protein interaction (PPI) network of four habitats, i. e
Enrichment of members of KEGG Orthology (KOs) families across MBTA surfaces before and after P. acnes removal. Enrichment of members of KEGG Orthology.
Genome-wide analysis of p53 occupancy.
Novel functional roles of uncharacterized genes as functional regulators of cellular cholesterol levels. Novel functional roles of uncharacterized genes.
Bar plot representation of the transcriptomic changes in Δsaci_ptp and Δsaci_pp2a. Bar plot representation of the transcriptomic changes in Δsaci_ptp and.
Voronoi treemaps (109) comparing protein expression profiles of M
Network analysis of some transcription factors and chromatin regulators that are directly and positively regulated by OsMADS1. Network analysis of some.
An integrated NHR network.
Combined regulatory network with three identified modules.
Gene ontology (GO) term enrichment for significantly downregulated genes. Gene ontology (GO) term enrichment for significantly downregulated genes. Visualization.
Overlap between changes in de novo protein synthesis after p53- or miR-34a-induction. Overlap between changes in de novo protein synthesis after p53- or.
Peptide abundances are uniformly distributed across the capsid protein in the recoded T7 strain. Peptide abundances are uniformly distributed across the.
Differential protein, mRNA, lncRNA and miRNA regulation by p53.
COLOURS.
Sampling locations and IDs for accessions sequenced in this study.
Modeling of Response Surfaces with the Producing Function (Equation 2)
Scatter plots represent log2 (FPKM (average) +1) values for genes in control and KO/KD samples. Scatter plots represent log2 (FPKM (average) +1) values.
HEAT repeats as part of large protein complexes.
Distribution of ARGs in RefSoil genomes and plasmids.
Triangle plot summarizing the unsupervised population structure analysis of A. gambiae M, S, and A. arabiensis individuals assuming three populations.
USP2a regulates MYC expression through the MDM2–p53 axis.
Gene P-values (−log10) of significant genes at the 1% nominal level in Europe (red bars), in Asia (blue bars,) or both continents (black bars) from the.
Z-stack compressions showing triple labelling of different cell types in the gills of bowfin with antibodies for serotonin (5-HT, green) and HNK-1 (magenta),
Structural Variations of the Kala4 Promoters in 21 Black Rice Varieties.The Kala4 promoters of 21 black rice varieties were classified into three types.
The genomic landscape of a HeLa cell line.
Genetic synteny is highly conserved between TLPQC (transmissible loci for protein quality control). Genetic synteny is highly conserved between TLPQC (transmissible.
Uptake of amino acids by C. albicans.
Chromosomal composition of the S. carlsbergensis genome.
Neighbor-joining tree of the 262 S
Schematic of proteins identified by RNA affinity purification-coupled LC-MS/MS and the hnRNPH-associated protein network recruited by the G-containing.
Volume 12, Issue 3, Pages (March 2019)
Synteny and Phylogeny of Putative GRMZM2G Orthologs.
HPV–human protein network map.
Cystic fibrosis transmembrane conductance regulator (CFTR) gene mutations are categorised into six classes. Cystic fibrosis transmembrane conductance regulator.
Overview of the metabolism of S. aciditrophicus.
The long tail of mutational hotspots in cancer.
8 Core Steps of success: I.Step:1 : DREAM SETTING: II. Step: 2 : LIST MAKING : IV. Step: 4 : SHOW THE PLAN: III. Step: 3 : INVITATION: V. Step: 5 : FOLLOW.
Fig. 4 The three DBT cycles involved in building syn3.0.
Fig. 3 Gene expression analysis in 48-plex drug treatment experiments.
Presentation transcript:

- FunCat terms associated with DEGs found in vs. - FunCat terms associated with DEGs found in vs. Control at 6 h, 24 h, and 48 h. The minus log10 of the p-value of DEGs in each term is proportional to the length of the bars. FunCat annotations and p-value as determined by FungiFun2(https://elbe.hki-jena.de/fungifun/fungifun.php): (i) metabolism is shown in orange, (ii) cellular transport, transport facilities and transport routes in light brown, (iii) cell rescue, defense & virulence in dark green, (iv) development in purple, (v) protein with binding function or cofactor requirement (structural or analytic) in black, (vi) protein synthesis in dark brown, (vii) energy in magenta, and (viii) interaction with the environment in light green. Down regulated genes are to the left of the origin and up regulated to the right. Jeffrey W. Cary et al. G3 2018;9:167-178 ©2019 by Genetics Society of America