Purification and concentration of PCR products leads to increased signal intensities with fewer allelic drop-outs and artifacts  L.M.I. Pedersen, M. Stangegaard,

Slides:



Advertisements
Similar presentations
The most efficient STR loci in forensic genetics in population of central Poland R. Jacewicz, M. Jedrzejczyk, J. Berent Forensic Science International:
Advertisements

Integration of the AmpFlSTR Identifiler PCR Amplification Kit with SRY-specific primers for gender identification  S. Inturri, C. Robino, S. Gino, S.
A comparison of AmpFlSTR Identifiler™ Kit versus AmpFlSTR Identifiler Plus™ Kit in challenging bone samples by using normal and increased PCR cycle number 
Collection protocols for the recovery of biological samples
A comparison of AmpFlSTR Identifiler™ Kit versus AmpFlSTR Identifiler Plus™ Kit in challenging bone samples by using normal and increased PCR cycle number 
Integration of the AmpFlSTR Identifiler PCR Amplification Kit with SRY-specific primers for gender identification  S. Inturri, C. Robino, S. Gino, S.
M. Scherer, B. Alsdorf, M. Breitbach, K. Matthaei, A. Schnur, N
Statistical model for degraded DNA samples and adjusted probabilities for allelic drop- out  Torben Tvedebrink, Poul Svante Eriksen, Helle Smidt Mogensen,
N. Cerri, S. Cisana, V. Cortellini, A. Verzeletti, A. Agostino, F
An evaluation of miniSTR markers for casework applications
Performance of the RapidHIT™200
A. Barbaro, P. Cormaci, G. Falcone 
Successful STR and SNP typing of FTA Card samples with low amounts of DNA after DNA extraction using a Qiagen BioRobot® EZ1 Workstation  Eszter Rockenbauer,
Use of universal reporter primers in multiplex PCR of autosomal loci
Modelling noise in second generation sequencing forensic genetics STR data using a one-inflated (zero-truncated) negative binomial model  Søren B. Vilsen,
Forensic identification of 12 mammals species based on size variation of mitochondrial cytochrome b gene using multiplex PCR assay  M. Črček, K. Drobnič 
Study of two X-linked microsatellite blocks: Allelic frequencies in mixed and isolated population groups  M. Castañeda, A. Odriozola, V. Mijares, M.T.
The effect of increased cycle numbers using the Quantifiler® Duo DNA Quantification Kit (AB) on the detection of minute amounts of male DNA in mixtures.
S. Dangsriwan, P. Thanakiatkrai, W. Asawutmangkul, S. Phetpeng, T
Stine Frisk Fredslund, Helle Smidt Mogensen, Niels Morling 
Development and use of a single-tube four dye, 21plex direct PCR autosomal STR loci amplification assay for human identification and relationship testing 
Development and optimisation of five multiplex assays with 115 of the AIM SNPs from the EUROFORGEN AIMs set on the Sequenom® MassARRAY® system  B. Lundsberg,
Template preparation of AmpliSeq™ libraries using the Ion Chef™
Establishment of Italian national DNA database and the central laboratory: Some aspects  R. Biondo, F. De Stefano  Forensic Science International: Genetics.
Sabine Michel, Anne De Bast, Isabelle Vandenbroere, Olivier Froment 
Yan Liu, Li Li, Chengtao Li, Zhenmin Zhao 
Repeated extraction of DNA from FTA cards
R. Alghafri, S. Alhammadi, K. Amiri 
Population data for SE33 locus in United Arab Emirates Arab population
Development of a SNP-STRs multiplex for forensic identification
Direct amplification of STRs from blood or buccal cell samples
Rapid STR analysis of single source DNA samples in 2h
Michael Stangegaard, Tobias G. Frøslev, Rune Frank-Hansen, Susan S
S. Iyavoo, A. Wolejko, D. Furmanczyk, R. Graham, R. Myers, T. Haizel 
Automated extraction of DNA from clothing
Rob Ogden, Elizabeth Heap, Ross McEwing 
Oskar Hansson, Peter Gill 
Advancing forensic RNA profiling: Preventing noise signals in RNA profiling by adding the multiplex buffer last  Margreet van den Berge, Titia Sijen 
Petra Zenke, Balázs Egyed, Zsolt Pádár, Gábor Kovács 
Thitika Kitpipit, Phuvadol Thanakiatkrai, Wilaiwan Chotigeat 
Automated addition of Chelex solution to tubes containing trace items
Evaluation of GeneMapper®ID-X Mixture Analysis tool
Evaluating DNA profiles using peak heights, allowing for dropin, dropout and stutters  Roberto Puch-Solis  Forensic Science International: Genetics Supplement.
DIP–STR: A new marker for resolving unbalanced DNA mixtures
A review of low template STR analysis in casework using the DNA SenCE post-PCR purification technique  T. Gross, J. Thomson, S. Kutranov  Forensic Science.
A comparison of AmpFlSTR Identifiler™ Kit versus AmpFlSTR Identifiler Plus™ Kit in challenging bone samples by using normal and increased PCR cycle number 
Population data of 8 X-STRs in South Italy (Calabria) using the Mentype® Argus X-8 PCR Amplification Kit (Biotype)  A. Barbaro, P. Cormaci, S. Votano,
Improving sample analysis and interpretation using QIAGEN’s latest Investigator® STR multiplex PCR assays with a novel quality sensor  M. Scherer, M.
Multiplex PCR for 19 X-chromosomal STRs in Chinese population
Introducing a latent variable approach for finding populations in a forensic DNA database  Maarten Kruijver  Forensic Science International: Genetics.
Determination of siblings: A special case report from Halle
Developmental validation of a fully automated genotyping assay capable of detecting length and sequence variation in the CODIS STR loci  David D. Duncan,
N. Scaramozzino, P. Terrenoire, L. Baron 
Testing the behavior of GlobalFiler® PCR amplification kit with degraded and/or inhibited biological samples  V. Bogas, M. Carvalho, F. Corte-Real, M.J.
Development of the Investigator STR GO
M. Hara, T. Masuda, A. Takada, T. Miyazaki, H. Suzuki, A. Kido, K
Is an increased drop-in rate appropriate with enhanced DNA profiling?
Application of less primer method to commercial kits
Linda Albinsson, Johannes Hedman, Ricky Ansell 
Eye colour and SNPs in Danes
DNA recovery from a 44-year old umbilical cord
Monique Wesselink, Irene Kuiper 
Effects of the most common methods for the enhancement of latent fingerprints on DNA extraction from forensic samples  S. Gino, M. Omedei  Forensic Science.
Genetic data for the locus SE33 in a Southern Italy population with AmpFlSTR NGM SElect™ PCR amplification kit  A. Barbaro, P. Cormaci, A. La Marca  Forensic.
Development of a 24-plex Y chromosomal STR loci typing system
Statistical aspects of familial searching
Forensic nomenclature for short tandem repeats updated for sequencing
First application of the Investigator DIPplex indels typing kit for the analysis of ancient DNA samples  C. Hollard, F. Mendisco, C. Keyser, E. Crubézy,
Discrepancies between forensic DNA databases
A.M. Ölçen, G. Filoğlu, H. Altunçul, S. Erdem, Ö. Bülbül 
Presentation transcript:

Purification and concentration of PCR products leads to increased signal intensities with fewer allelic drop-outs and artifacts  L.M.I. Pedersen, M. Stangegaard, H.S. Mogensen, N. Morling  Forensic Science International: Genetics Supplement Series  Volume 3, Issue 1, Pages e347-e348 (December 2011) DOI: 10.1016/j.fsigss.2011.09.036 Copyright © 2011 Elsevier Ireland Ltd Terms and Conditions

Fig. 1 Non-purified (A and C) and purified (B and D) amplificates from a trace evidence sample. A and B: Primer peaks. C and D: Electropherograms with signal intensities in RFU. The blue lines represent 50RFU that is the lower threshold for STR-typing at our department. The arrow in C indicates the presence of a fluorochrome derived artifact. Arrow in D indicates the position of the artifact if not purified. Forensic Science International: Genetics Supplement Series 2011 3, e347-e348DOI: (10.1016/j.fsigss.2011.09.036) Copyright © 2011 Elsevier Ireland Ltd Terms and Conditions

Fig. 2 The average signal intensities across all loci (RFU) pre- and post-PCR purification, ±std. dev. of non-purified (n=1) diluted amplificates electrophoresed with injection times of 10, 20 and 30s compared to purified (n=4) amplificates electrophoresed with 10s injection time. Forensic Science International: Genetics Supplement Series 2011 3, e347-e348DOI: (10.1016/j.fsigss.2011.09.036) Copyright © 2011 Elsevier Ireland Ltd Terms and Conditions