Figure 1. (A) Architecture of Doc2Hpo. (B) Interactive user interface

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J Exp Bot. 2017;68(17): doi: /jxb/erx352

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Figure 1. (A) Architecture of Doc2Hpo. (B) Interactive user interface Figure 1. (A) Architecture of Doc2Hpo. (B) Interactive user interface. 1. Automated extraction includes three parts: ... Figure 1. (A) Architecture of Doc2Hpo. (B) Interactive user interface. 1. Automated extraction includes three parts: light green highlights the clinical entity identified within the text, the term in the appended dark green box identifies the standardized HPO concept, and the ‘N’ button appended indicates the negation modifier (red for negation). 2–3. The user can highlight any text and add an HPO concept. The user can also double click to delete an erroneous extraction; 4–5. The user can change the standardized HPO concept by clicking the dark green box. The user could search for the desired HPO concept and make updates in real-time. 6. The user can click the ‘N’ button to change the negation modifier. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Nucleic Acids Res, gkz386, https://doi.org/10.1093/nar/gkz386 The content of this slide may be subject to copyright: please see the slide notes for details.

Figure 2. (A) Box and whisker plots of time consumption by using Doc2Hpo and manual curation across three different ... Figure 2. (A) Box and whisker plots of time consumption by using Doc2Hpo and manual curation across three different annotators. (B) The accuracy (precision, recall, and F1 score) for different approaches across different annotators. The error bars indicate the 95% confidence intervals. ‘Auto’ refers to fully automated HPO curation based on MetaMap without negation detection. ‘Auto (negex)’ refers to fully automated HPO curation based on MetaMap with negation detection. ‘Doc2hpo’ refers to Doc2Hpo-aided user curation. ‘Manual’ refers to user curation without using Doc2Hpo. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Nucleic Acids Res, gkz386, https://doi.org/10.1093/nar/gkz386 The content of this slide may be subject to copyright: please see the slide notes for details.