Enrichment of microbial functions with elevated triclosan.

Slides:



Advertisements
Similar presentations
FACULTY ADMINISTRATIVE SCIENCE AND POLICY STUDIES ADS511 RESEARCH METHOD AND DATA NALAYSIS CORRELATION ANALYSIS.
Advertisements

Gene Set Enrichment Analysis. GSEA: Key Features Ranks all genes on array based on their differential expression Identifies gene sets whose member genes.
K. Brennan, J.L. Koenig, A.J. Gentles, J.B. Sunwoo, O. Gevaert
Behaviorally dependent allele-specific expression.
Fig. 3. Copy number loss as a potential resistance mechanism in an independent cohort. Copy number loss as a potential resistance mechanism in an independent.
Transcriptional response to mating in whole A. gambiae females.
The mRNA stem cell signature.
Anna L. P. Chapman, Brian M. Morrissey, Vihas T. Vasu, Maya M
Comparative analysis of RNA and protein profiles.
Cooccurrence network for dolphin rectum microbiome.
Cell-Line Selectivity Improves the Predictive Power of Pharmacogenomic Analyses and Helps Identify NADPH as Biomarker for Ferroptosis Sensitivity  Kenichi.
Transdomain taxonomic profiles from subway shotgun metagenomes.
Effect of mTOR inhibition on the Myc‐induced response
Selected KEGG genes that were significantly more abundant (>2 log2-fold change; FDR-adjusted P < 0.005) in plastic-associated metagenomic libraries than.
Meta-analysis of the Listeriomics transcriptomic data sets.
Transcription levels of metabolic pathways and genes in mother and infant pair 4 at time point 2. Transcription levels of metabolic pathways and genes.
Bacteroidetes bacteria are the main contributors to LPS biosynthesis in the human gut microbiome. Bacteroidetes bacteria are the main contributors to LPS.
Presence of motifs correlated with decreased expression of downstream genes. Presence of motifs correlated with decreased expression of downstream genes.
Enrichment of members of KEGG Orthology (KOs) families across MBTA surfaces before and after P. acnes removal. Enrichment of members of KEGG Orthology.
Distributions of pairwise correlation coefficients from cooccurrence models computed from temporal data (fecal) and spatial data (biopsy samples; means.
Functional enrichment of differentially expressed genes.
Bar plot representation of the transcriptomic changes in Δsaci_ptp and Δsaci_pp2a. Bar plot representation of the transcriptomic changes in Δsaci_ptp and.
Volume 39, Issue 2, Pages (October 2016)
Determination of mRNA synthesis and decay rates.
Transformation of expression data to identify more direct consequences of perturbation Expression changes under amino acid starvation conditions (30 min,
Functional networks of proteins associated with SL3a, SL3abc, SL123, and D3 transcripts. Functional networks of proteins associated with SL3a, SL3abc,
Metabolite predictability across metabolic categories (A) and disease states (B) in the vaginal microbiome. Metabolite predictability across metabolic.
Metabolite predictability is consistent between vaginal and mouse cecal data sets. Metabolite predictability is consistent between vaginal and mouse cecal.
RNA-seq of Glutamicibacter arilaitensis alone and cocultured with Penicillium sp. 12. RNA-seq of Glutamicibacter arilaitensis alone and cocultured with.
Trends in metabolite predictability in terms of key gene contributors.
Persistent organic pollutants and diabetes - Spearman correlation coefficients* among six POPs with age, sex, race and ethnicity, poverty income.
RNA abundance correlates with fitness.
Expression profiles of 5,493 transcripts grouped by k-means clustering
Taxonomy assessment of metagenes with differential abundance as a result of the AXOS intervention. Taxonomy assessment of metagenes with differential abundance.
Building groupings based on culture density, diversity, and drug resistance phenotypes. Building groupings based on culture density, diversity, and drug.
Fig. 3 Conserved genomic association of PRC1 activity in different leukemic cells. Conserved genomic association of PRC1 activity in different leukemic.
Gain of function in the gut microbiome as a consequence of AXOS ingestion. Gain of function in the gut microbiome as a consequence of AXOS ingestion. Overrepresented.
Ingenuity pathway analysis of the genes enriched in both 96-h-induced MMs and human ccRCC. Ingenuity pathway analysis of the genes enriched in both 96-h-induced.
RNAseq–Volcano plots, qPCR validation, and GO enrichment analysis.
5mC-loss/5hmC-gain loci characterize neurogenic genes up-regulated during fate commitment. 5mC-loss/5hmC-gain loci characterize neurogenic genes up-regulated.
Reanalysis of an existing experiment using ADAGE
Human pancreatic islet chromatin accessibility profiles from 19 donors
Relative growth of transcription factor knockout mutants on different sulfur sources. Relative growth of transcription factor knockout mutants on different.
Identification of acetylated peptides and proteins by LC-MS/MS.
Stage-specific expression modules of preimplantation development.
Comparison of species and function profiles with ultradeep sequencing data. Comparison of species and function profiles with ultradeep sequencing data.
Extended analysis of differential expression datasets.
mRNA adenosine-to-inosine editing increases under DR.
Enrichment of miRNAs among DPAR genes and their relative expression under dietary restriction. Enrichment of miRNAs among DPAR genes and their relative.
Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;
The correlation network constructed using the identified metagenomic species (MGS), metabolic parameters (including TGs, TC, and FPG), SCFAs (including.
Survival based on V gene mutation status and CD38 expression among B-CLL patients who stratify to the Rai intermediate risk category. Survival based on.
Enrichment of KEGG pathways in microbial genes in different samples.
Fig. 2 Inflammatory pathways with STAT1 as a key regulator are enriched in ICB responsive tumors in mouse models and patients. Inflammatory pathways with.
Visuoperceptual decoding.
Distinct molecular and clinical correlates of H3F3A mutation subgroups
KEGG categories of host DEGs (up- and downregulated genes) enriched at selected points after φAbp1 infection. KEGG categories of host DEGs (up- and downregulated.
Derivation of ImSig. Derivation of ImSig. A, An example of a correlation network generated from a tissue data set where nodes represent unique genes and.
The log-transformed reporter Z scores of the metabolic pathways showing significant differences between the PCOS and control groups. The log-transformed.
Ki-67 expression is determined by the cell-cycle stage.
Relationship between the expression of immune-related genes and burdens of somatic mutation. Relationship between the expression of immune-related genes.
Integrated pathogen load and dual transcriptome analysis of systemic host-pathogen interactions in severe malaria by Hyun Jae Lee, Athina Georgiadou, Michael.
Relationships between antimicrobial chemicals, features of the built environment, and microbial communities. Relationships between antimicrobial chemicals,
Relationships between biocide concentrations and microbial species.
Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.
Fig. 2 CD4 T cell subset composition in aging.
Distinct subtypes of CAFs are detected in human PDAC
Fig. 5 Density plots showing the relationship between growth responses to extreme events and site-level mean precipitation from all sites (N = 1314). Density.
Association between genome size and the dN/dS ratio for archaeal (A; n = 21) and bacterial (B; n = 28) genome pairs and association between coding density.
Fig. 4 The abundance of Bifidobacterium in breast-fed infant guts is associated with FL transporter genes. The abundance of Bifidobacterium in breast-fed.
Presentation transcript:

Enrichment of microbial functions with elevated triclosan. Enrichment of microbial functions with elevated triclosan. (a) Overrepresented functional capabilities among triclosan-related species (results of GSEA [42, 43]). Significantly overrepresented modules are grouped based on KEGG (38) functional categories. (b) Positive relationships between log2 1 + x-transformed gene copies per million (CPM) and triclosan levels (ng g−1 dust) for the most enriched module, the mtrAB transcriptional regulators. Bars represent individual rooms, stratified based on the proportions of species-specific annotations. Marker colors for triclosan levels are the same as in Fig. 1d. (c and d) Bar plots as in panel b for the two functions with the highest positive Spearman rank correlation coefficients with triclosan (ρ = 0.29 and 0.23, respectively). Ashkaan K. Fahimipour et al. mSystems 2018; doi:10.1128/mSystems.00200-18