NMR spectra of Erk. NMR spectra of Erk. (A) Superimposed 1H/15N HSQC spectra of Erk‐pTpY (black) and Erk‐TY (red). Blue circles and arrows mark the C‐terminal.

Slides:



Advertisements
Similar presentations
Calcium-Induced Conformational Switching of Paramecium Calmodulin Provides Evidence for Domain Coupling Jaren et al. Biochemistry 2002, 41,
Advertisements

Statistical colorings of 1H NMR estimates of biochemical variables.
T.P. Galbraith, R. Harris, P.C. Driscoll, B.A. Wallace 
by Sunghyouk Park, Michael E. Johnson, and Leslie W.-M. Fung
Abundance of proteins matching selected subcellular locations and functions in CaCo‐2 cells. Abundance of proteins matching selected subcellular locations.
Mapping of the Interaction Interface of DNA Polymerase β with XRCC1
Experimental confirmation of in vitro GPCR activity of compounds and their scaffolds screened from a chemical library. Experimental confirmation of in.
Volume 9, Issue 10, Pages (October 2001)
A kinetic model reconciles observed ERK phosphorylation, localization, and activity responses A Schematic of a simple kinetic model including cytosolic.
The loop E–loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins 
Solution Structure of ZASP PDZ Domain
Most promoters preserve their relative activity levels across conditions. Most promoters preserve their relative activity levels across conditions. (A)
(A) Graph depicting interaction between the five regulatory motifs measured by synergy and cooccurrence. (A) Graph depicting interaction between the five.
Analysis of in silico flux changes along the exponential growth phase: (A) In silico flux changes from 24 to 36 h, from 36 to 48 h, and from 48 to 60 h.
Motif detectability corresponds to the phylogenetic profile of the cognate transcription factor. Motif detectability corresponds to the phylogenetic profile.
Heatmaps of the gene mutation distributions in oncogene‐signaling blocks for six representative cancer types. Heatmaps of the gene mutation distributions.
Two competing models for Rab domain identity generation and endosome conversion. Two competing models for Rab domain identity generation and endosome conversion.
Volume 8, Issue 7, Pages (July 2000)
SPR and NMR analyses of interactions of HOIL‐1L–UBL with the HOIP–UBA derivative. SPR and NMR analyses of interactions of HOIL‐1L–UBL with the HOIP–UBA.
Volume 105, Issue 2, Pages (July 2013)
Structure of in‐frame deletions.
Tertiary structure characterization with 1H‐NMR at 900 MHz
Volume 9, Issue 10, Pages (October 2002)
Solution Structure of the U11-48K CHHC Zinc-Finger Domain that Specifically Binds the 5′ Splice Site of U12-Type Introns  Henning Tidow, Antonina Andreeva,
DBM‐mimetic binding of KY‐02061 on the Dvl PDZ domain
Analysis of light spectra.
Barley lipid-transfer protein complexed with palmitoyl CoA: the structure reveals a hydrophobic binding site that can expand to fit both large and small.
Marker reproducibility and metastasis prediction performance.
Heat maps showing global relative growth phenotype and comparison between measured and predicted values. Heat maps showing global relative growth phenotype.
Volume 11, Issue 7, Pages (July 2003)
RNAi causes widespread changes in cell population context leading to predictable changes in virus infection. RNAi causes widespread changes in cell population.
Alignment time for Clustal Omega (red), MAFFT (blue), MUSCLE (green) and Kalign (purple) against the number of sequences of HomFam test sets. Alignment.
Mutants of the Group III have differentially impaired induction of pAGA1 and pFIG1 Mutants of the Group III have differentially impaired induction of pAGA1.
The transcript profiles in the three human cell lines based on RNA sequencing (RNA‐seq). The transcript profiles in the three human cell lines based on.
Dynamic changes of protein phosphorylation identify ERK1/2 substrates from cytosolic and nuclear compartments. Dynamic changes of protein phosphorylation.
Examples for intrachromosomal mRNA co‐regulation patches
Volume 21, Issue 10, Pages (October 2013)
Nuclear Magnetic Resonance Structure of a Novel Globular Domain in RBM10 Containing OCRE, the Octamer Repeat Sequence Motif  Bryan T. Martin, Pedro Serrano,
Bisection mapping of T7. RNAP
Volume 23, Issue 5, Pages (May 2015)
Patient organoids respond more diverse to drugs and with lower therapeutic potential than 2D cultured patient cells Patient organoids respond more diverse.
Engineered Domain Swapping as an On/Off Switch for Protein Function
Volume 21, Issue 12, Pages (December 2013)
The cell cycle influences circadian phase progression Circadian intervals with divisions (p1,d1,p2) last 21.95 ± 3.8 h (n = 1,926) and are significantly.
Recursive construction and error correction of a simple combinatorial library. Recursive construction and error correction of a simple combinatorial library.
A Functional Proline Switch in Cytochrome P450cam
Volume 13, Issue 2, Pages (February 2005)
Comparison of proteomics and RNA‐Seq data.
Volume 106, Issue 4, Pages (February 2014)
Antibody analysis of Erk.
Subnetworks enriched for the hallmarks of cancer.
Volume 13, Issue 7, Pages (July 2005)
Network modules correspond to known and novel functional distinctions between neuronal subtypes. Network modules correspond to known and novel functional.
Identification of a new cryptic lipid‐binding domain in Ecm25.
A multitiered approach to characterize transcriptome structure.
Validation of phosphatase hits mapping prediction on the optimized growth model. Validation of phosphatase hits mapping prediction on the optimized growth.
Antisense expression associates with larger gene expression variability. Antisense expression associates with larger gene expression variability. (A–D)
Experimental validation of predicted endocytosis functions in human.
Remodeling of the mitochondrial and extracellular proteome during Caenorhabditis elegans aging Remodeling of the mitochondrial and extracellular proteome.
Patterns and regulation of age‐related splicing changes.
Competence initiation during the progression to spore formation.
Scribble PDZ1 preferentially interacts with p‐1 and p‐3 phosphorylated ligands as shown by affinity determinations (MST and ITC), NMR structure, mutational.
Structural Impact of Tau Phosphorylation at Threonine 231
Volume 80, Issue 6, Pages (June 2001)
Volume 14, Issue 2, Pages (February 2006)
Characterization of Structure, Dynamics, and Detergent Interactions of the Anti-HIV Chemokine Variant 5P12-RANTES  Maciej Wiktor, Oliver Hartley, Stephan.
Volume 109, Issue 7, Pages (October 2015)
Dynamic Short Hydrogen Bonds in Histidine Tetrad of Full-Length M2 Proton Channel Reveal Tetrameric Structural Heterogeneity and Functional Mechanism 
T.P. Galbraith, R. Harris, P.C. Driscoll, B.A. Wallace 
Volume 76, Issue 1, Pages (January 1999)
Presentation transcript:

NMR spectra of Erk. NMR spectra of Erk. (A) Superimposed 1H/15N HSQC spectra of Erk‐pTpY (black) and Erk‐TY (red). Blue circles and arrows mark the C‐terminal Y resonance used for normalisation (Supplementary Figure 8) and the additional A and T resonances used for quantifying pTpY (Supplementary Methods 1.1). The small box in the centre shows a major and a minor peak that are present in Erk‐pTpY but not in Erk‐TY, in the region above 8.8 δ1H, where pS and pT are found. The box is enlarged in inset 2. Inset 1 shows a section of the 3D HNCACB spectrum, with the peaks corresponding to the Cα and Cβ of the major peak in Erk‐pTpY (vertical black dashed line). This identifies the major peak as coming from pT. Inset 3 shows the region corresponding to inset 2 from the 1H/15N HSQC spectrum of Erk‐pTY. Supplementary Figure 6 explains why the major peak of Erk‐pTY and the minor peak of Erk‐pTpY, linked by the vertical blue dashed line, represent pT(EY), while the major peak in the Erk‐pTpY sample represents pT(EpY). Additional peaks below the small box do not titrate with pH and therefore do not correspond to phosphorylated residues. The horizontal scales on all three insets are the same (δ1H in p.p.m.), but the vertical scale on inset 1 is δ13C in p.p.m., while on insets 2 and 3 it is δ15N in p.p.m. (B) Superimposition of three 1H/15N HSQC spectra, colour coded as described in the legend. Note that the horizontal and vertical ranges are different from the insets in part a. The minor peak in the Erk‐pTpY spectrum falls on the same pH titration line as the major peaks in the Erk‐pTY spectra, supporting the assignment in A. The resonances in the two pH titration lines at the top (arrows) show that there are at least two more pS or pT residues in addition to that on the canonical TEY motif, as discussed in the text. These additional peaks could not be assigned by NMR as their 3D HNCACB intensities were too low. Sudhakaran Prabakaran et al. Mol Syst Biol 2011;7:482 © as stated in the article, figure or figure legend